diff --git a/pkg/target/extendedpatch_test.go b/pkg/target/extendedpatch_test.go
index dc647ad7d..f24f209c9 100644
--- a/pkg/target/extendedpatch_test.go
+++ b/pkg/target/extendedpatch_test.go
@@ -922,3 +922,226 @@ spec:
     app: busybox
 `)
 }
+
+func TestExtendedPatchNoMatchMultiplePatch(t *testing.T) {
+	th := kusttest_test.NewKustTestHarness(t, "/app/base")
+	makeCommonFileForExtendedPatchTest(th)
+	th.WriteK("/app/base", `
+resources:
+- deployment.yaml
+- service.yaml
+patches:
+- path: patch.yaml
+  target:
+    name: no-match
+- path: patch.yaml
+  target:
+    name: busybox
+    kind: Job
+`)
+	th.WriteF("/app/base/patch.yaml", `
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  name: busybox
+  annotations:
+    new-key: new-value
+`)
+	m, err := th.MakeKustTarget().MakeCustomizedResMap()
+	if err != nil {
+		t.Fatalf("Err: %v", err)
+	}
+	th.AssertActualEqualsExpected(m, `
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  template:
+    metadata:
+      labels:
+        app: nginx
+    spec:
+      containers:
+      - image: nginx
+        name: nginx
+        volumeMounts:
+        - mountPath: /tmp/ps
+          name: nginx-persistent-storage
+      volumes:
+      - emptyDir: {}
+        name: nginx-persistent-storage
+      - configMap:
+          name: configmap-in-base
+        name: configmap-in-base
+---
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  labels:
+    app: busybox
+  name: busybox
+spec:
+  template:
+    metadata:
+      labels:
+        app: busybox
+    spec:
+      containers:
+      - image: busybox
+        name: busybox
+        volumeMounts:
+        - mountPath: /tmp/ps
+          name: busybox-persistent-storage
+      volumes:
+      - emptyDir: {}
+        name: busybox-persistent-storage
+      - configMap:
+          name: configmap-in-base
+        name: configmap-in-base
+---
+apiVersion: v1
+kind: Service
+metadata:
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  ports:
+  - port: 80
+  selector:
+    app: nginx
+---
+apiVersion: v1
+kind: Service
+metadata:
+  labels:
+    app: busybox
+  name: busybox
+spec:
+  ports:
+  - port: 8080
+  selector:
+    app: busybox
+`)
+}
+
+func TestExtendedPatchMultiplePatchOverlapping(t *testing.T) {
+	th := kusttest_test.NewKustTestHarness(t, "/app/base")
+	makeCommonFileForExtendedPatchTest(th)
+	th.WriteK("/app/base", `
+resources:
+- deployment.yaml
+- service.yaml
+patches:
+- path: patch1.yaml
+  target:
+    labelSelector: app=busybox
+- path: patch2.yaml
+  target:
+    name: busybox
+    kind: Deployment
+`)
+	th.WriteF("/app/base/patch1.yaml", `
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  name: busybox
+  annotations:
+    new-key-from-patch1: new-value
+`)
+	th.WriteF("/app/base/patch2.yaml", `
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  name: busybox
+  annotations:
+    new-key-from-patch2: new-value
+`)
+	m, err := th.MakeKustTarget().MakeCustomizedResMap()
+	if err != nil {
+		t.Fatalf("Err: %v", err)
+	}
+	th.AssertActualEqualsExpected(m, `
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  template:
+    metadata:
+      labels:
+        app: nginx
+    spec:
+      containers:
+      - image: nginx
+        name: nginx
+        volumeMounts:
+        - mountPath: /tmp/ps
+          name: nginx-persistent-storage
+      volumes:
+      - emptyDir: {}
+        name: nginx-persistent-storage
+      - configMap:
+          name: configmap-in-base
+        name: configmap-in-base
+---
+apiVersion: apps/v1beta2
+kind: Deployment
+metadata:
+  annotations:
+    new-key-from-patch1: new-value
+    new-key-from-patch2: new-value
+  labels:
+    app: busybox
+  name: busybox
+spec:
+  template:
+    metadata:
+      labels:
+        app: busybox
+    spec:
+      containers:
+      - image: busybox
+        name: busybox
+        volumeMounts:
+        - mountPath: /tmp/ps
+          name: busybox-persistent-storage
+      volumes:
+      - emptyDir: {}
+        name: busybox-persistent-storage
+      - configMap:
+          name: configmap-in-base
+        name: configmap-in-base
+---
+apiVersion: v1
+kind: Service
+metadata:
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  ports:
+  - port: 80
+  selector:
+    app: nginx
+---
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    new-key-from-patch1: new-value
+  labels:
+    app: busybox
+  name: busybox
+spec:
+  ports:
+  - port: 8080
+  selector:
+    app: busybox
+`)
+}
diff --git a/plugin/builtin/PatchTransformer.go b/plugin/builtin/PatchTransformer.go
index 7eefd39c1..f243a1560 100644
--- a/plugin/builtin/PatchTransformer.go
+++ b/plugin/builtin/PatchTransformer.go
@@ -114,10 +114,11 @@ func (p *PatchTransformerPlugin) Transform(m resmap.ResMap) error {
 			}
 		}
 		if p.loadedPatch != nil {
-			p.loadedPatch.SetName(resource.GetName())
-			p.loadedPatch.SetNamespace(resource.GetNamespace())
-			p.loadedPatch.SetGvk(resource.GetGvk())
-			err = resource.Patch(p.loadedPatch.Kunstructured)
+			patchCopy := p.loadedPatch.DeepCopy()
+			patchCopy.SetName(resource.GetName())
+			patchCopy.SetNamespace(resource.GetNamespace())
+			patchCopy.SetGvk(resource.GetGvk())
+			err = resource.Patch(patchCopy.Kunstructured)
 			if err != nil {
 				return err
 			}
diff --git a/plugin/builtin/patchtransformer/PatchTransformer.go b/plugin/builtin/patchtransformer/PatchTransformer.go
index 1b02717ba..16f82198c 100644
--- a/plugin/builtin/patchtransformer/PatchTransformer.go
+++ b/plugin/builtin/patchtransformer/PatchTransformer.go
@@ -115,10 +115,11 @@ func (p *plugin) Transform(m resmap.ResMap) error {
 			}
 		}
 		if p.loadedPatch != nil {
-			p.loadedPatch.SetName(resource.GetName())
-			p.loadedPatch.SetNamespace(resource.GetNamespace())
-			p.loadedPatch.SetGvk(resource.GetGvk())
-			err = resource.Patch(p.loadedPatch.Kunstructured)
+			patchCopy := p.loadedPatch.DeepCopy()
+			patchCopy.SetName(resource.GetName())
+			patchCopy.SetNamespace(resource.GetNamespace())
+			patchCopy.SetGvk(resource.GetGvk())
+			err = resource.Patch(patchCopy.Kunstructured)
 			if err != nil {
 				return err
 			}