Merge pull request #4552 from KnVerey/version-mismatch

Copy of go 1.18 created version mismatch, reverting for now

.github/ISSUE_TEMPLATE/bug_report.md

@@ -8,7 +8,7 @@ assignees: ""
 ---
 
 <!--
-Please read this page: https://kubernetes-sigs.github.io/kustomize/contributing/bugs/ before
+Please read this page: https://kubectl.docs.kubernetes.io/contributing/kustomize/bugs/ before
 filing a bug
 -->
 

.gitignore

@@ -21,3 +21,12 @@
 *.DS_store
 
 .bin
+
+# Hugo site
+site/public/
+site/resources/
+site/.hugo_build.lock
+**/node_modules/
+
+# goreleaser artifacts
+**/dist/

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "site/themes/docsy"]
+	path = site/themes/docsy
+	url = https://github.com/google/docsy.git

Makefile

@@ -12,7 +12,7 @@ MYGOBIN = $(shell go env GOPATH)/bin
 endif
 export PATH := $(MYGOBIN):$(PATH)
 MODULES := '"cmd/config" "api/" "kustomize/" "kyaml/"'
-LATEST_V4_RELEASE=v4.4.1
+LATEST_V4_RELEASE=v4.5.3
 
 # Provide defaults for REPO_OWNER and REPO_NAME if not present.
 # Typically these values would be provided by Prow.
@@ -224,8 +224,8 @@ generate-kustomize-api: $(MYGOBIN)/k8scopy
 
 .PHONY: test-unit-kustomize-api
 test-unit-kustomize-api: build-kustomize-api
-	cd api; go test ./...  -ldflags "-X sigs.k8s.io/kustomize/api/provenance.version=v444.333.222"; \
-	cd krusty; OPENAPI_TEST=true go test -run TestCustomOpenAPIFieldFromComponentWithOverlays
+	cd api; go test ./...  -ldflags "-X sigs.k8s.io/kustomize/api/provenance.version=v444.333.222"
+	cd api/krusty; OPENAPI_TEST=true go test -run TestCustomOpenAPIFieldFromComponentWithOverlays
 
 .PHONY: test-unit-kustomize-plugins
 test-unit-kustomize-plugins:

OWNERS_ALIASES

@@ -3,18 +3,14 @@
 aliases:
   kustomize-owners:
     - knverey
-    - monopole
-    - pwittrock
-  kustomize-approvers:
-    - justinsb
-    - knverey
-    - monopole
     - natasha41575
-    - pwittrock
+  kustomize-approvers:
+    - knverey
+    - natasha41575
   kustomize-reviewers:
     - knverey
-    - monopole
     - natasha41575
+    - yuwenma
 
   kyaml-approvers:
     - mengqiy
@@ -28,3 +24,6 @@ aliases:
   emeritus-approvers:
     - liujingfang1
     - Shell32-Natsu
+    - justinsb
+    - monopole
+    - pwittrock

README.md

@@ -11,8 +11,8 @@ and it's like [`sed`], in that it emits edited text.
 
 This tool is sponsored by [sig-cli] ([KEP]).
 
- - [Installation instructions](https://kubernetes-sigs.github.io/kustomize/installation)
- - [General documentation](https://kubernetes-sigs.github.io/kustomize)
+ - [Installation instructions](https://kubectl.docs.kubernetes.io/installation/kustomize/)
+ - [General documentation](https://kubectl.docs.kubernetes.io/references/kustomize/)
  - [Examples](examples)
 
 [![Build Status](https://prow.k8s.io/badge.svg?jobs=kustomize-presubmit-master)](https://prow.k8s.io/job-history/kubernetes-jenkins/pr-logs/directory/kustomize-presubmit-master)
@@ -34,13 +34,13 @@ will be reflected in the Kubernetes release notes.
 | v1.21 | v4.0.5 |
 | v1.22 | v4.2.0 |
 
-[v2.0.3]: /../../tree/v2.0.3
+[v2.0.3]: https://github.com/kubernetes-sigs/kustomize/releases/tag/v2.0.3
 [#2506]: https://github.com/kubernetes-sigs/kustomize/issues/2506
 [#1500]: https://github.com/kubernetes-sigs/kustomize/issues/1500
 [kust-in-kubectl update]: https://github.com/kubernetes/kubernetes/blob/4d75a6238a6e330337526e0513e67d02b1940b63/CHANGELOG/CHANGELOG-1.21.md#kustomize-updates-in-kubectl
 
 For examples and guides for using the kubectl integration please
-see the [kubectl book] or the [kubernetes documentation].
+see the [kubernetes documentation].
 
 ## Usage
 
@@ -141,8 +141,9 @@ The YAML can be directly [applied] to a cluster:
 
 ## Community
 
-- [file a bug](https://kubernetes-sigs.github.io/kustomize/contributing/bugs/) instructions
-- [contribute a feature](https://kubernetes-sigs.github.io/kustomize/contributing/features/) instructions
+- [file a bug](https://kubectl.docs.kubernetes.io/contributing/kustomize/bugs/)
+- [contribute a feature](https://kubectl.docs.kubernetes.io/contributing/kustomize/features/)
+- [propose a larger enhancement](https://github.com/kubernetes-sigs/kustomize/tree/master/proposals)
 
 ### Code of conduct
 
@@ -151,27 +152,22 @@ is governed by the [Kubernetes Code of Conduct].
 
 [`make`]: https://www.gnu.org/software/make
 [`sed`]: https://www.gnu.org/software/sed
-[DAM]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#declarative-application-management
+[DAM]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#declarative-application-management
 [KEP]: https://github.com/kubernetes/enhancements/blob/master/keps/sig-cli/2377-Kustomize/README.md
 [Kubernetes Code of Conduct]: code-of-conduct.md
-[applied]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#apply
-[base]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#base
-[declarative configuration]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#declarative-application-management
-[imageBase]: docs/images/base.jpg
-[imageOverlay]: docs/images/overlay.jpg
+[applied]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#apply
+[base]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#base
+[declarative configuration]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#declarative-application-management
+[imageBase]: images/base.jpg
+[imageOverlay]: images/overlay.jpg
 [kubectl announcement]: https://kubernetes.io/blog/2019/03/25/kubernetes-1-14-release-announcement
-[kubectl book]: https://kubectl.docs.kubernetes.io/guides/introduction/kustomize/
 [kubernetes documentation]: https://kubernetes.io/docs/tasks/manage-kubernetes-objects/kustomization/
-[kubernetes style]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#kubernetes-style-object
-[kustomization]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#kustomization
-[overlay]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#overlay
-[overlays]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#overlay
+[kubernetes style]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#kubernetes-style-object
+[kustomization]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#kustomization
+[overlay]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#overlay
+[overlays]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#overlay
 [release page]: https://github.com/kubernetes-sigs/kustomize/releases
-[resource]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#resource
-[resources]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#resource
+[resource]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#resource
+[resources]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#resource
 [sig-cli]: https://github.com/kubernetes/community/blob/master/sig-cli/README.md
-[variant]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#variant
-[variants]: https://kubernetes-sigs.github.io/kustomize/api-reference/glossary#variant
-[v2.0.3]: https://github.com/kubernetes-sigs/kustomize/releases/tag/v2.0.3
-[v2.1.0]: https://github.com/kubernetes-sigs/kustomize/releases/tag/v2.1.0
-[workflows]: https://kubernetes-sigs.github.io/kustomize/guides
+[variants]: https://kubectl.docs.kubernetes.io/references/kustomize/glossary/#variant

ROADMAP.md

@@ -0,0 +1,112 @@
+# Kustomize roadmap 2022
+
+Presented at the [January 26, 2022, SIG-CLI meeting](https://youtu.be/l2plzJ9MRlk?t=1321)
+
+kustomize maintainers: @knverey, @natasha41575
+
+[Objective: Improve contributor community](#objective-improve-contributor-community)
+
+[Objective: Improve end-user experience](#objective-improve-end-user-experience)
+
+[Objective: Improve extension experience](#objective-improve-extension-experience)
+
+## Objective: Improve contributor community
+
+**_WHO: End user who also contributes source code._**
+
+Top priority:
+
+- Kustomization v1 (also end-user impact) ([PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/12))
+  - Remove the following fields:
+    - [vars](https://github.com/kubernetes-sigs/kustomize/issues/2052)
+    - [patchesJson6902, patchesStrategicMerge (consolidate on \`patches)](https://github.com/kubernetes-sigs/kustomize/issues/4376)
+    - [helmChartInflationGenerator, helmCharts, helmGlobals](https://github.com/kubernetes-sigs/kustomize/issues/4401)
+    - all long-deprecated fields in Kustomization v1 such as \`bases\` and those being accommodate by kustomize edit \[[see code snippet](https://github.com/kubernetes-sigs/kustomize/blob/ee4b7847f0beb6c0d2070673b10f23f7b3e92e82/api/types/fix.go#L15)\]
+  - Ensure that \`kustomize edit fix\` handles migrations for all those, and that anything it changes is not still present in v1.
+  - [Add reorder field](https://github.com/kubernetes-sigs/kustomize/issues/3913). Default should be FIFO and legacy should also be supported (could add alphabetic and custom sort support eventually). Replaces -reorder flag.
+  - [Reconcile openapi and crds field](https://github.com/kubernetes-sigs/kustomize/issues/3944)
+  - [Consider deprecating configurations field](https://github.com/kubernetes-sigs/kustomize/issues/3945) (old, pre-plugin, pre-openapi global configuration)
+  - [Add a field to enable the managedby label](https://github.com/kubernetes-sigs/kustomize/issues/4047)
+
+Second priority:
+
+- Improve contributor documentation
+  - [Instructions to upgrade kustomize-in-kubectl](https://github.com/kubernetes-sigs/kustomize/issues/3951)
+
+Also very valuable to the project:
+
+- [Improve the release process](https://github.com/kubernetes-sigs/kustomize/issues/3952) to support regular biweekly releases [PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/7)
+- Release sigs.k8s.io/kustomize/api v1.0.0 [PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/5)
+  - [Reduce the public surface of the API module](https://github.com/kubernetes-sigs/kustomize/issues/3942)
+  - [Vendor all transitive deps](https://github.com/kubernetes-sigs/kustomize/issues/3706). Since kustomize is in kubectl, we must do as kubectl does to manage deps, exposing new transitive deps in code review.
+- Project administration
+  - [Rename master branch to main](https://github.com/kubernetes-sigs/kustomize/issues/3954)
+
+
+
+## Objective: Improve end-user experience
+
+**_WHO: End user that wants kustomize build artifacts (binaries, containers)._**
+
+Top priorities:
+
+- Bug fixes:
+  - Fix bugs in basic anchor support: [issue query](https://github.com/kubernetes-sigs/kustomize/issues?q=is%3Aopen+is%3Aissue+label%3Aarea%2Fanchors)
+  - integer keys support: [#3446](https://github.com/kubernetes-sigs/kustomize/issues/3446)
+  - kyaml not respecting \`$patch replace|retainKeys\`: [#2037](https://github.com/kubernetes-sigs/kustomize/issues/2037)
+  - kustomize removing quotes from namespace field values: [#4146](https://github.com/kubernetes-sigs/kustomize/issues/4146)
+  - Kustomize doesn’t support metadata.generateName: [#641](https://github.com/kubernetes-sigs/kustomize/issues/641)
+- Send kustomize CLI version number into kubectl ([kubectl issue](https://github.com/kubernetes/kubectl/issues/797) / [kustomize issue](https://github.com/kubernetes-sigs/kustomize/issues/1424))
+- Kustomize performance investigations/improvements [PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/13)
+- [Support generic resource references in name reference tracking](https://github.com/kubernetes-sigs/kustomize/issues/3418)
+- [KEP 4267: retain the resource origin and transformer data in annotations](https://github.com/kubernetes-sigs/kustomize/pull/4267)
+
+Secondary priorities:
+
+- kustomize cli v5 ([PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/14))
+  - [Drop the --reorder flag](https://github.com/kubernetes-sigs/kustomize/issues/3947)
+  - [Graduate cfg read-only commands out of alpha](https://github.com/kubernetes-sigs/kustomize/issues/4090).
+  - [Drop the –enable-managedby-label](https://github.com/kubernetes-sigs/kustomize/issues/4047)
+  - Drop old plugin-related fields in favor of [the Catalog-style fields](https://github.com/kubernetes/enhancements/tree/master/keps/sig-cli/2906-kustomize-function-catalog).
+  - [Drop the helm flags](https://github.com/kubernetes-sigs/kustomize/issues/4401)
+- [Confusion around namespace replacement](https://github.com/kubernetes-sigs/kustomize/issues/880).
+
+Also very valuable to the project:
+
+- [Overinclusion of root directory error in error messages](https://github.com/kubernetes-sigs/kustomize/issues/4348)
+- [Add kustomize localize command](https://github.com/kubernetes-sigs/kustomize/issues/3980)
+- [Fix Windows support in test suite](https://github.com/kubernetes-sigs/kustomize/issues/4001)
+- Improve end-user documentation [PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/9)
+
+
+## Objective: Improve extension experience
+
+**_WHO: Plugin developers: end users who extend kustomize, but don’t think about internals._**
+
+This objective is described in detail in the [Kustomize Plugin Graduation KEP](https://github.com/kubernetes/enhancements/tree/master/keps/sig-cli/2953-kustomize-plugin-graduation) / [PROJECT](https://github.com/kubernetes-sigs/kustomize/projects/15) .
+
+Top priorities:
+
+- Fix core usability issues with KRM Function extensions:
+  - [Better errors for function config failures](https://github.com/kubernetes-sigs/kustomize/issues/4398)
+  - [Container KRM Mounts are not mounting via function parameters](https://github.com/kubernetes-sigs/kustomize/issues/4290)
+  - [Resolution of local file references in extensions transformer configuration](https://github.com/kubernetes-sigs/kustomize/issues/4154)
+  - [Do not silently ignore plugins when config has typo](https://github.com/kubernetes-sigs/kustomize/issues/4399)
+  - [KRM Exec Function can't locate executable when referencing a base](https://github.com/kubernetes-sigs/kustomize/issues/4347)
+- Once core usability issues are fixed, [deprecate legacy exec and Go plugin support](https://github.com/kubernetes/enhancements/tree/master/keps/sig-cli/2953-kustomize-plugin-graduation)
+- [Catalog KEP](https://github.com/kubernetes/enhancements/tree/master/keps/sig-cli/2906-kustomize-function-catalog)
+
+Secondary priorities:
+
+- [Remove Starlark support](https://github.com/kubernetes-sigs/kustomize/issues/4349)
+- [Composition KEP](https://github.com/kubernetes/enhancements/pull/2300). The implementation is complete in [#4223](https://github.com/kubernetes-sigs/kustomize/pull/4323), but depends on:
+  - [Convert resources and components to be backed by a reusable generator](https://github.com/kubernetes-sigs/kustomize/issues/4402)
+  - [Enable explicitly invoked transformers to use default fieldSpecs](https://github.com/kubernetes-sigs/kustomize/issues/4404)
+  - [Enable built-in generators to be used in the transformers field ](https://github.com/kubernetes-sigs/kustomize/issues/4403)
+
+
+Also very valuable to the project:
+
+- [Improve docs for kyaml libraries](https://github.com/kubernetes-sigs/kustomize/issues/3950), especially by adding examples.
+- [Create a reserved field for plugin runtime information](https://github.com/kubernetes-sigs/kustomize/issues/4405)
+- [Develop new standard process for implementing builtin transformers](https://github.com/kubernetes-sigs/kustomize/issues/4400)

api/filters/annotations/annotations.go

@@ -20,22 +20,15 @@ type Filter struct {
 	// FsSlice contains the FieldSpecs to locate the namespace field
 	FsSlice types.FsSlice
 
-	// SetEntryCallback is invoked each time an annotation is applied
-	// Example use cases:
-	//   - Tracking all paths where annotations have been applied
-	SetEntryCallback func(key, value, tag string, node *yaml.RNode)
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
 
-func (f Filter) setEntry(key, value, tag string) filtersutil.SetFn {
-	baseSetEntryFunc := filtersutil.SetEntry(key, value, tag)
-	return func(node *yaml.RNode) error {
-		if f.SetEntryCallback != nil {
-			f.SetEntryCallback(key, value, tag, node)
-		}
-		return baseSetEntryFunc(node)
-	}
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (f *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	f.trackableSetter.WithMutationTracker(callback)
 }
 
 func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
@@ -45,7 +38,7 @@ func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 			for _, k := range keys {
 				if err := node.PipeE(fsslice.Filter{
 					FsSlice: f.FsSlice,
-					SetValue: f.setEntry(
+					SetValue: f.trackableSetter.SetEntry(
 						k, f.Annotations[k], yaml.NodeTagString),
 					CreateKind: yaml.MappingNode, // Annotations are MappingNodes.
 					CreateTag:  yaml.NodeTagMap,

api/filters/annotations/annotations_test.go

@@ -16,31 +16,15 @@ import (
 
 var annosFs = builtinconfig.MakeDefaultConfig().CommonAnnotations
 
-type setEntryArg struct {
-	Key      string
-	Value    string
-	Tag      string
-	NodePath []string
-}
-
-var setEntryArgs []setEntryArg
-
-func setEntryCallbackStub(key, value, tag string, node *yaml.RNode) {
-	setEntryArgs = append(setEntryArgs, setEntryArg{
-		Key:      key,
-		Value:    value,
-		Tag:      tag,
-		NodePath: node.FieldPath(),
-	})
-}
-
 func TestAnnotations_Filter(t *testing.T) {
+	mutationTrackStub := filtertest_test.MutationTrackerStub{}
 	testCases := map[string]struct {
 		input                string
 		expectedOutput       string
 		filter               Filter
 		fsslice              types.FsSlice
-		expectedSetEntryArgs []setEntryArg
+		setEntryCallback     func(key, value, tag string, node *yaml.RNode)
+		expectedSetEntryArgs []filtertest_test.SetValueArg
 	}{
 		"add": {
 			input: `
@@ -259,15 +243,15 @@ spec:
 					"a": "a1",
 					"b": "b1",
 				},
-				SetEntryCallback: setEntryCallbackStub,
 			},
+			setEntryCallback: mutationTrackStub.MutationTracker,
 			fsslice: []types.FieldSpec{
 				{
 					Path:               "spec/template/metadata/annotations",
 					CreateIfNotPresent: true,
 				},
 			},
-			expectedSetEntryArgs: []setEntryArg{
+			expectedSetEntryArgs: []filtertest_test.SetValueArg{
 				{
 					Key:      "a",
 					Value:    "a1",
@@ -297,16 +281,17 @@ spec:
 	}
 
 	for tn, tc := range testCases {
-		setEntryArgs = nil
+		mutationTrackStub.Reset()
 		t.Run(tn, func(t *testing.T) {
 			filter := tc.filter
+			filter.WithMutationTracker(tc.setEntryCallback)
 			filter.FsSlice = append(annosFs, tc.fsslice...)
 			if !assert.Equal(t,
 				strings.TrimSpace(tc.expectedOutput),
 				strings.TrimSpace(filtertest_test.RunFilter(t, tc.input, filter))) {
 				t.FailNow()
 			}
-			if !assert.Equal(t, tc.expectedSetEntryArgs, setEntryArgs) {
+			if !assert.Equal(t, tc.expectedSetEntryArgs, mutationTrackStub.SetValueArgs()) {
 				t.FailNow()
 			}
 		})

api/filters/fieldspec/fieldspec.go

@@ -51,9 +51,8 @@ func (fltr Filter) Filter(obj *yaml.RNode) (*yaml.RNode, error) {
 	}
 	fltr.path = utils.PathSplitter(fltr.FieldSpec.Path, "/")
 	if err := fltr.filter(obj); err != nil {
-		s, _ := obj.String()
 		return nil, errors.WrapPrefixf(err,
-			"considering field '%s' of object\n%v", fltr.FieldSpec.Path, s)
+			"considering field '%s' of object %s", fltr.FieldSpec.Path, resid.FromRNode(obj))
 	}
 	return obj, nil
 }
@@ -138,6 +137,8 @@ func (fltr Filter) handleMap(obj *yaml.RNode) error {
 // seq calls filter on all sequence elements
 func (fltr Filter) handleSequence(obj *yaml.RNode) error {
 	if err := obj.VisitElements(func(node *yaml.RNode) error {
+		// set an accurate FieldPath for nested elements
+		node.AppendToFieldPath(obj.FieldPath()...)
 		// recurse on each element -- re-allocating a Filter is
 		// not strictly required, but is more consistent with field
 		// and less likely to have side effects

api/filters/fieldspec/fieldspec_test.go

@@ -59,14 +59,7 @@ apiVersion: foo
 kind: Bar
 xxx:
 `,
-			error: `considering field '' of object
-apiVersion: foo/v1
-kind: Bar
-xxx:
-metadata:
-  annotations:
-    internal.config.kubernetes.io/annotations-migration-resource-id: '0'
-: cannot set or create an empty field name`,
+			error: `considering field '' of object Bar.v1.foo/[noName].[noNs]: cannot set or create an empty field name`,
 			filter: fieldspec.Filter{
 				SetValue: filtersutil.SetScalar("e"),
 			},
@@ -219,14 +212,7 @@ kind: Bar
 a:
   b: a
 `,
-			error: `considering field 'a/b/c' of object
-kind: Bar
-a:
-  b: a
-metadata:
-  annotations:
-    internal.config.kubernetes.io/annotations-migration-resource-id: '0'
-: expected sequence or mapping node`,
+			error: `considering field 'a/b/c' of object Bar.[noVer].[noGrp]/[noName].[noNs]: expected sequence or mapping node`,
 			filter: fieldspec.Filter{
 				SetValue: filtersutil.SetScalar("e"),
 			},
@@ -572,3 +558,85 @@ a:
 		})
 	}
 }
+
+func TestFilter_FieldPaths(t *testing.T) {
+	testCases := map[string]struct {
+		input     string
+		fieldSpec string
+		expected  []string
+	}{
+		"fieldpath containing SequenceNode": {
+			input: `
+apiVersion: v1
+kind: Pod
+metadata:
+  name: app
+spec:
+  containers:
+  - name: store
+    image: redis:6.2.6
+  - name: server
+    image: nginx:latest
+`,
+			fieldSpec: `
+path: spec/containers[]/image
+kind: Pod
+`,
+			expected: []string{
+				"spec.containers.image",
+				"spec.containers.image",
+			},
+		},
+		"fieldpath with MappingNode": {
+			input: `
+apiVersion: v1
+kind: Pod
+metadata:
+  name: app
+spec:
+  containers:
+  - name: store
+    image: redis:6.2.6
+  - name: server
+    image: nginx:latest
+`,
+			fieldSpec: `
+path: metadata/name
+kind: Pod
+`,
+			expected: []string{
+				"metadata.name",
+			},
+		},
+	}
+	for name, tc := range testCases {
+		var fieldPaths []string
+		trackableSetter := filtersutil.TrackableSetter{}
+		trackableSetter.WithMutationTracker(func(key, value, tag string, node *yaml.RNode) {
+			fieldPaths = append(fieldPaths, strings.Join(node.FieldPath(), "."))
+		})
+		filter := fieldspec.Filter{
+			SetValue: trackableSetter.SetScalar("foo"),
+		}
+
+		t.Run(name, func(t *testing.T) {
+			err := yaml.Unmarshal([]byte(tc.fieldSpec), &filter.FieldSpec)
+			assert.NoError(t, err)
+			rw := &kio.ByteReadWriter{
+				Reader:                bytes.NewBufferString(tc.input),
+				Writer:                &bytes.Buffer{},
+				OmitReaderAnnotations: true,
+			}
+
+			// run the filter
+			err = kio.Pipeline{
+				Inputs:  []kio.Reader{rw},
+				Filters: []kio.Filter{kio.FilterAll(filter)},
+				Outputs: []kio.Writer{rw},
+			}.Execute()
+
+			assert.NoError(t, err)
+			assert.Equal(t, tc.expected, fieldPaths)
+		})
+	}
+}

api/filters/filtersutil/setters.go

@@ -21,9 +21,6 @@ func SetEntry(key, value, tag string) SetFn {
 		Value: value,
 		Tag:   tag,
 	}
-	if tag == yaml.NodeTagString && yaml.IsYaml1_1NonString(n) {
-		n.Style = yaml.DoubleQuotedStyle
-	}
 	return func(node *yaml.RNode) error {
 		return node.PipeE(yaml.FieldSetter{
 			Name:  key,
@@ -31,3 +28,39 @@ func SetEntry(key, value, tag string) SetFn {
 		})
 	}
 }
+
+type TrackableSetter struct {
+	// SetValueCallback will be invoked each time a field is set
+	setValueCallback func(key, value, tag string, node *yaml.RNode)
+}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (s *TrackableSetter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	s.setValueCallback = callback
+}
+
+// SetScalar returns a SetFn to set a scalar value
+// if a mutation tracker has been registered, the tracker will be invoked each
+// time a scalar is set
+func (s TrackableSetter) SetScalar(value string) SetFn {
+	origSetScalar := SetScalar(value)
+	return func(node *yaml.RNode) error {
+		if s.setValueCallback != nil {
+			s.setValueCallback("", value, "", node)
+		}
+		return origSetScalar(node)
+	}
+}
+
+// SetEntry returns a SetFn to set an entry in a map
+// if a mutation tracker has been registered, the tracker will be invoked each
+// time an entry is set
+func (s TrackableSetter) SetEntry(key, value, tag string) SetFn {
+	origSetEntry := SetEntry(key, value, tag)
+	return func(node *yaml.RNode) error {
+		if s.setValueCallback != nil {
+			s.setValueCallback(key, value, tag, node)
+		}
+		return origSetEntry(node)
+	}
+}

api/filters/imagetag/imagetag.go

@@ -23,9 +23,17 @@ type Filter struct {
 	// FsSlice contains the FieldSpecs to locate an image field,
 	// e.g. Path: "spec/myContainers[]/image"
 	FsSlice types.FsSlice `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (f *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	f.trackableSetter.WithMutationTracker(callback)
+}
 
 func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	_, err := kio.FilterAll(yaml.FilterFunc(f.filter)).Filter(nodes)
@@ -40,8 +48,11 @@ func (f Filter) filter(node *yaml.RNode) (*yaml.RNode, error) {
 		return node, nil
 	}
 	if err := node.PipeE(fsslice.Filter{
-		FsSlice:  f.FsSlice,
-		SetValue: updateImageTagFn(f.ImageTag),
+		FsSlice: f.FsSlice,
+		SetValue: imageTagUpdater{
+			ImageTag:        f.ImageTag,
+			trackableSetter: f.trackableSetter,
+		}.SetImageValue,
 	}); err != nil {
 		return nil, err
 	}
@@ -59,11 +70,3 @@ func (f Filter) isOnDenyList(node *yaml.RNode) bool {
 	// https://github.com/kubernetes-sigs/kustomize/issues/890
 	return meta.Kind == `CustomResourceDefinition`
 }
-
-func updateImageTagFn(imageTag types.Image) filtersutil.SetFn {
-	return func(node *yaml.RNode) error {
-		return node.PipeE(imageTagUpdater{
-			ImageTag: imageTag,
-		})
-	}
-}

api/filters/imagetag/imagetag_test.go

@@ -10,14 +10,18 @@ import (
 	"github.com/stretchr/testify/assert"
 	filtertest "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 func TestImageTagUpdater_Filter(t *testing.T) {
+	mutationTrackerStub := filtertest.MutationTrackerStub{}
 	testCases := map[string]struct {
-		input          string
-		expectedOutput string
-		filter         Filter
-		fsSlice        types.FsSlice
+		input                string
+		expectedOutput       string
+		filter               Filter
+		fsSlice              types.FsSlice
+		setValueCallback     func(key, value, tag string, node *yaml.RNode)
+		expectedSetValueArgs []filtertest.SetValueArg
 	}{
 		"ignore CustomResourceDefinition": {
 			input: `
@@ -658,17 +662,198 @@ spec:
 				},
 			},
 		},
+		"mutation tracker": {
+			input: `
+group: apps
+apiVersion: v1
+kind: Deployment
+metadata:
+  name: deploy1
+spec:
+  template:
+    spec:
+      containers:
+      - image: nginx:1.7.9
+        name: nginx-tagged
+      - image: nginx:latest
+        name: nginx-latest
+      - image: foobar:1
+        name: replaced-with-digest
+      - image: postgres:1.8.0
+        name: postgresdb
+      initContainers:
+      - image: nginx
+        name: nginx-notag
+      - image: nginx@sha256:111111111111111111
+        name: nginx-sha256
+      - image: alpine:1.8.0
+        name: init-alpine
+`,
+			expectedOutput: `
+group: apps
+apiVersion: v1
+kind: Deployment
+metadata:
+  name: deploy1
+spec:
+  template:
+    spec:
+      containers:
+      - image: busybox:v3
+        name: nginx-tagged
+      - image: busybox:v3
+        name: nginx-latest
+      - image: foobar:1
+        name: replaced-with-digest
+      - image: postgres:1.8.0
+        name: postgresdb
+      initContainers:
+      - image: busybox:v3
+        name: nginx-notag
+      - image: busybox:v3
+        name: nginx-sha256
+      - image: alpine:1.8.0
+        name: init-alpine
+`,
+			filter: Filter{
+				ImageTag: types.Image{
+					Name:    "nginx",
+					NewName: "busybox",
+					NewTag:  "v3",
+				},
+			},
+			fsSlice: []types.FieldSpec{
+				{
+					Path: "spec/template/spec/containers[]/image",
+				},
+				{
+					Path: "spec/template/spec/initContainers[]/image",
+				},
+			},
+			setValueCallback: mutationTrackerStub.MutationTracker,
+			expectedSetValueArgs: []filtertest.SetValueArg{
+				{
+					Value:    "busybox:v3",
+					NodePath: []string{"spec", "template", "spec", "containers", "image"},
+				},
+				{
+					Value:    "busybox:v3",
+					NodePath: []string{"spec", "template", "spec", "containers", "image"},
+				},
+				{
+					Value:    "busybox:v3",
+					NodePath: []string{"spec", "template", "spec", "initContainers", "image"},
+				},
+				{
+					Value:    "busybox:v3",
+					NodePath: []string{"spec", "template", "spec", "initContainers", "image"},
+				},
+			},
+		},
+		"image with tag and digest new name": {
+			input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: nginx:1.2.1@sha256:46d5b90a7f4e9996351ad893a26bcbd27216676ad4d5316088ce351fb2c2c3dd
+`,
+			expectedOutput: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: apache:1.2.1@sha256:46d5b90a7f4e9996351ad893a26bcbd27216676ad4d5316088ce351fb2c2c3dd
+`,
+			filter: Filter{
+				ImageTag: types.Image{
+					Name:    "nginx",
+					NewName: "apache",
+				},
+			},
+			fsSlice: []types.FieldSpec{
+				{
+					Path: "spec/image",
+				},
+			},
+		},
+		"image with tag and digest new name new tag": {
+			input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: nginx:1.2.1@sha256:46d5b90a7f4e9996351ad893a26bcbd27216676ad4d5316088ce351fb2c2c3dd
+`,
+			expectedOutput: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: apache:1.3.0
+`,
+			filter: Filter{
+				ImageTag: types.Image{
+					Name:    "nginx",
+					NewName: "apache",
+					NewTag:  "1.3.0",
+				},
+			},
+			fsSlice: []types.FieldSpec{
+				{
+					Path: "spec/image",
+				},
+			},
+		},
+		"image with tag and digest new name new tag and digest": {
+			input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: nginx:1.2.1@sha256:46d5b90a7f4e9996351ad893a26bcbd27216676ad4d5316088ce351fb2c2c3dd
+`,
+			expectedOutput: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+spec:
+  image: apache:1.3.0@sha256:xyz
+`,
+			filter: Filter{
+				ImageTag: types.Image{
+					Name:    "nginx",
+					NewName: "apache",
+					NewTag:  "1.3.0",
+					Digest:  "sha256:xyz",
+				},
+			},
+			fsSlice: []types.FieldSpec{
+				{
+					Path: "spec/image",
+				},
+			},
+		},
 	}
 
 	for tn, tc := range testCases {
+		mutationTrackerStub.Reset()
 		t.Run(tn, func(t *testing.T) {
 			filter := tc.filter
+			filter.WithMutationTracker(tc.setValueCallback)
 			filter.FsSlice = tc.fsSlice
 			if !assert.Equal(t,
 				strings.TrimSpace(tc.expectedOutput),
 				strings.TrimSpace(filtertest.RunFilter(t, tc.input, filter))) {
 				t.FailNow()
 			}
+			assert.Equal(t, tc.expectedSetValueArgs, mutationTrackerStub.SetValueArgs())
 		})
 	}
 }

api/filters/imagetag/updater.go

@@ -4,6 +4,7 @@
 package imagetag
 
 import (
+	"sigs.k8s.io/kustomize/api/filters/filtersutil"
 	"sigs.k8s.io/kustomize/api/image"
 	"sigs.k8s.io/kustomize/api/types"
 	"sigs.k8s.io/kustomize/kyaml/yaml"
@@ -13,31 +14,53 @@ import (
 // that will update the value of the yaml node based on the provided
 // ImageTag if the current value matches the format of an image reference.
 type imageTagUpdater struct {
-	Kind     string      `yaml:"kind,omitempty"`
-	ImageTag types.Image `yaml:"imageTag,omitempty"`
+	Kind            string      `yaml:"kind,omitempty"`
+	ImageTag        types.Image `yaml:"imageTag,omitempty"`
+	trackableSetter filtersutil.TrackableSetter
 }
 
-func (u imageTagUpdater) Filter(rn *yaml.RNode) (*yaml.RNode, error) {
+func (u imageTagUpdater) SetImageValue(rn *yaml.RNode) error {
 	if err := yaml.ErrorIfInvalid(rn, yaml.ScalarNode); err != nil {
-		return nil, err
+		return err
 	}
 
 	value := rn.YNode().Value
 
 	if !image.IsImageMatched(value, u.ImageTag.Name) {
-		return rn, nil
+		return nil
 	}
 
-	name, tag := image.Split(value)
+	name, tag, digest := image.Split(value)
 	if u.ImageTag.NewName != "" {
 		name = u.ImageTag.NewName
 	}
-	if u.ImageTag.NewTag != "" {
-		tag = ":" + u.ImageTag.NewTag
-	}
-	if u.ImageTag.Digest != "" {
-		tag = "@" + u.ImageTag.Digest
+
+	// overriding tag or digest will replace both original tag and digest values
+	if u.ImageTag.NewTag != "" && u.ImageTag.Digest != "" {
+		tag = u.ImageTag.NewTag
+		digest = u.ImageTag.Digest
+	} else if u.ImageTag.NewTag != "" {
+		tag = u.ImageTag.NewTag
+		digest = ""
+	} else if u.ImageTag.Digest != "" {
+		tag = ""
+		digest = u.ImageTag.Digest
 	}
 
-	return rn.Pipe(yaml.FieldSetter{StringValue: name + tag})
+	// build final image name
+	if tag != "" {
+		name += ":" + tag
+	}
+	if digest != "" {
+		name += "@" + digest
+	}
+
+	return u.trackableSetter.SetScalar(name)(rn)
+}
+
+func (u imageTagUpdater) Filter(rn *yaml.RNode) (*yaml.RNode, error) {
+	if err := u.SetImageValue(rn); err != nil {
+		return nil, err
+	}
+	return rn, nil
 }

api/filters/labels/labels.go

@@ -20,9 +20,17 @@ type Filter struct {
 
 	// FsSlice identifies the label fields.
 	FsSlice types.FsSlice
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (f *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	f.trackableSetter.WithMutationTracker(callback)
+}
 
 func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	keys := yaml.SortedMapKeys(f.Labels)
@@ -31,7 +39,7 @@ func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 			for _, k := range keys {
 				if err := node.PipeE(fsslice.Filter{
 					FsSlice: f.FsSlice,
-					SetValue: filtersutil.SetEntry(
+					SetValue: f.trackableSetter.SetEntry(
 						k, f.Labels[k], yaml.NodeTagString),
 					CreateKind: yaml.MappingNode, // Labels are MappingNodes.
 					CreateTag:  yaml.NodeTagMap,

api/filters/labels/labels_test.go

@@ -11,13 +11,17 @@ import (
 	filtertest_test "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
 	"sigs.k8s.io/kustomize/kyaml/resid"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 func TestLabels_Filter(t *testing.T) {
+	mutationTrackerStub := filtertest_test.MutationTrackerStub{}
 	testCases := map[string]struct {
-		input          string
-		expectedOutput string
-		filter         Filter
+		input                string
+		expectedOutput       string
+		filter               Filter
+		setEntryCallback     func(key, value, tag string, node *yaml.RNode)
+		expectedSetEntryArgs []filtertest_test.SetValueArg
 	}{
 		"add": {
 			input: `
@@ -399,15 +403,74 @@ metadata:
 				},
 			},
 		},
+
+		// test usage of SetEntryCallback
+		"set_entry_callback": {
+			input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+  labels:
+    witcher: geralt
+`,
+			expectedOutput: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+  labels:
+    witcher: geralt
+    mage: yennefer
+a:
+  b:
+    mage: yennefer
+`,
+			filter: Filter{
+				Labels: labelMap{
+					"mage": "yennefer",
+				},
+				FsSlice: []types.FieldSpec{
+					{
+						Path:               "metadata/labels",
+						CreateIfNotPresent: true,
+					},
+					{
+						Path:               "a/b",
+						CreateIfNotPresent: true,
+					},
+				},
+			},
+			setEntryCallback: mutationTrackerStub.MutationTracker,
+			expectedSetEntryArgs: []filtertest_test.SetValueArg{
+				{
+					Key:      "mage",
+					Value:    "yennefer",
+					Tag:      "!!str",
+					NodePath: []string{"metadata", "labels"},
+				},
+				{
+					Key:      "mage",
+					Value:    "yennefer",
+					Tag:      "!!str",
+					NodePath: []string{"a", "b"},
+				},
+			},
+		},
 	}
 
 	for tn, tc := range testCases {
+		mutationTrackerStub.Reset()
 		t.Run(tn, func(t *testing.T) {
+			tc.filter.WithMutationTracker(tc.setEntryCallback)
 			if !assert.Equal(t,
 				strings.TrimSpace(tc.expectedOutput),
 				strings.TrimSpace(filtertest_test.RunFilter(t, tc.input, tc.filter))) {
 				t.FailNow()
 			}
+			if !assert.Equal(t, tc.expectedSetEntryArgs, mutationTrackerStub.SetValueArgs()) {
+				t.FailNow()
+			}
 		})
 	}
 }

api/filters/namespace/namespace.go

@@ -18,9 +18,17 @@ type Filter struct {
 
 	// FsSlice contains the FieldSpecs to locate the namespace field
 	FsSlice types.FsSlice `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (ns *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	ns.trackableSetter.WithMutationTracker(callback)
+}
 
 func (ns Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	return kio.FilterAll(yaml.FilterFunc(ns.run)).Filter(nodes)
@@ -44,7 +52,7 @@ func (ns Filter) run(node *yaml.RNode) (*yaml.RNode, error) {
 	// transformations based on data -- :)
 	err := node.PipeE(fsslice.Filter{
 		FsSlice:    ns.FsSlice,
-		SetValue:   filtersutil.SetScalar(ns.Namespace),
+		SetValue:   ns.trackableSetter.SetEntry("", ns.Namespace, yaml.NodeTagString),
 		CreateKind: yaml.ScalarNode, // Namespace is a ScalarNode
 		CreateTag:  yaml.NodeTagString,
 	})
@@ -77,7 +85,7 @@ func (ns Filter) metaNamespaceHack(obj *yaml.RNode, gvk resid.Gvk) error {
 		FsSlice: []types.FieldSpec{
 			{Path: types.MetadataNamespacePath, CreateIfNotPresent: true},
 		},
-		SetValue:   filtersutil.SetScalar(ns.Namespace),
+		SetValue:   ns.trackableSetter.SetEntry("", ns.Namespace, yaml.NodeTagString),
 		CreateKind: yaml.ScalarNode, // Namespace is a ScalarNode
 	}
 	_, err := f.Filter(obj)
@@ -123,11 +131,15 @@ func (ns Filter) roleBindingHack(obj *yaml.RNode, gvk resid.Gvk) error {
 		}
 
 		// set the namespace for the default account
-		v := yaml.NewScalarRNode(ns.Namespace)
-		return o.PipeE(
+		node, err := o.Pipe(
 			yaml.LookupCreate(yaml.ScalarNode, "namespace"),
-			yaml.FieldSetter{Value: v},
 		)
+		if err != nil {
+			return err
+		}
+
+		return ns.trackableSetter.SetEntry("", ns.Namespace, yaml.NodeTagString)(node)
+
 	})
 
 	return err

api/filters/namespace/namespace_test.go

@@ -12,8 +12,11 @@ import (
 	"sigs.k8s.io/kustomize/api/internal/plugins/builtinconfig"
 	filtertest_test "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
+var mutationTrackerStub = filtertest_test.MutationTrackerStub{}
+
 var tests = []TestCase{
 	{
 		name: "add",
@@ -283,21 +286,125 @@ a:
 			},
 		},
 	},
+
+	{
+		name: "mutation tracker",
+		input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+---
+apiVersion: example.com/v1
+kind: RoleBinding
+subjects:
+- name: default
+`,
+		expected: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+  namespace: bar
+a:
+  b:
+    c: bar
+---
+apiVersion: example.com/v1
+kind: RoleBinding
+subjects:
+- name: default
+  namespace: bar
+metadata:
+  namespace: bar
+a:
+  b:
+    c: bar
+`,
+		filter: namespace.Filter{Namespace: "bar"},
+		fsslice: []types.FieldSpec{
+			{
+				Path:               "a/b/c",
+				CreateIfNotPresent: true,
+			},
+		},
+		mutationTracker: mutationTrackerStub.MutationTracker,
+		expectedSetValueArgs: []filtertest_test.SetValueArg{
+			{
+				Value:    "bar",
+				Tag:      "!!str",
+				NodePath: []string{"metadata", "namespace"},
+			},
+			{
+				Value:    "bar",
+				Tag:      "!!str",
+				NodePath: []string{"a", "b", "c"},
+			},
+			{
+				Value:    "bar",
+				Tag:      "!!str",
+				NodePath: []string{"metadata", "namespace"},
+			},
+			{
+				Value:    "bar",
+				Tag:      "!!str",
+				NodePath: []string{"namespace"},
+			},
+			{
+				Value:    "bar",
+				Tag:      "!!str",
+				NodePath: []string{"a", "b", "c"},
+			},
+		},
+	},
+
+	{
+		name: "numeric",
+		input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: instance
+`,
+		expected: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+  namespace: "01234"
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: instance
+  namespace: "01234"
+`,
+		filter: namespace.Filter{Namespace: "01234"},
+	},
 }
 
 type TestCase struct {
-	name     string
-	input    string
-	expected string
-	filter   namespace.Filter
-	fsslice  types.FsSlice
+	name                 string
+	input                string
+	expected             string
+	filter               namespace.Filter
+	fsslice              types.FsSlice
+	mutationTracker      func(key, value, tag string, node *yaml.RNode)
+	expectedSetValueArgs []filtertest_test.SetValueArg
 }
 
 var config = builtinconfig.MakeDefaultConfig()
 
 func TestNamespace_Filter(t *testing.T) {
 	for i := range tests {
+		mutationTrackerStub.Reset()
 		test := tests[i]
+		test.filter.WithMutationTracker(test.mutationTracker)
 		t.Run(test.name, func(t *testing.T) {
 			test.filter.FsSlice = append(config.NameSpace, test.fsslice...)
 			if !assert.Equal(t,
@@ -306,6 +413,7 @@ func TestNamespace_Filter(t *testing.T) {
 					filtertest_test.RunFilter(t, test.input, test.filter))) {
 				t.FailNow()
 			}
+			assert.Equal(t, test.expectedSetValueArgs, mutationTrackerStub.SetValueArgs())
 		})
 	}
 }

api/filters/prefix/prefix.go

@@ -18,9 +18,17 @@ type Filter struct {
 	Prefix string `json:"prefix,omitempty" yaml:"prefix,omitempty"`
 
 	FieldSpec types.FieldSpec `json:"fieldSpec,omitempty" yaml:"fieldSpec,omitempty"`
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (f *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	f.trackableSetter.WithMutationTracker(callback)
+}
 
 func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	return kio.FilterAll(yaml.FilterFunc(f.run)).Filter(nodes)
@@ -37,6 +45,6 @@ func (f Filter) run(node *yaml.RNode) (*yaml.RNode, error) {
 }
 
 func (f Filter) evaluateField(node *yaml.RNode) error {
-	return filtersutil.SetScalar(fmt.Sprintf(
+	return f.trackableSetter.SetScalar(fmt.Sprintf(
 		"%s%s", f.Prefix, node.YNode().Value))(node)
 }

api/filters/prefix/prefix_test.go

@@ -11,8 +11,11 @@ import (
 	"sigs.k8s.io/kustomize/api/filters/prefix"
 	filtertest_test "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
+var mutationTrackerStub = filtertest_test.MutationTrackerStub{}
+
 var tests = map[string]TestCase{
 	"prefix": {
 		input: `
@@ -83,17 +86,61 @@ a:
 			FieldSpec: types.FieldSpec{Path: "a/b/c"},
 		},
 	},
+
+	"mutation tracker": {
+		input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: instance
+`,
+		expected: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: foo-instance
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: foo-instance
+`,
+		filter: prefix.Filter{
+			Prefix:    "foo-",
+			FieldSpec: types.FieldSpec{Path: "metadata/name"},
+		},
+		mutationTracker: mutationTrackerStub.MutationTracker,
+		expectedSetValueArgs: []filtertest_test.SetValueArg{
+			{
+				Value:    "foo-instance",
+				NodePath: []string{"metadata", "name"},
+			},
+			{
+				Value:    "foo-instance",
+				NodePath: []string{"metadata", "name"},
+			},
+		},
+	},
 }
 
 type TestCase struct {
-	input    string
-	expected string
-	filter   prefix.Filter
+	input                string
+	expected             string
+	filter               prefix.Filter
+	mutationTracker      func(key, value, tag string, node *yaml.RNode)
+	expectedSetValueArgs []filtertest_test.SetValueArg
 }
 
 func TestFilter(t *testing.T) {
 	for name := range tests {
+		mutationTrackerStub.Reset()
 		test := tests[name]
+		test.filter.WithMutationTracker(test.mutationTracker)
 		t.Run(name, func(t *testing.T) {
 			if !assert.Equal(t,
 				strings.TrimSpace(test.expected),
@@ -101,6 +148,7 @@ func TestFilter(t *testing.T) {
 					filtertest_test.RunFilter(t, test.input, test.filter))) {
 				t.FailNow()
 			}
+			assert.Equal(t, test.expectedSetValueArgs, mutationTrackerStub.SetValueArgs())
 		})
 	}
 }

api/filters/refvar/refvar_test.go

@@ -243,19 +243,7 @@ metadata:
 data:
   slice:
   - false`,
-			expectedError: `considering field 'data/slice' of object
-apiVersion: apps/v1
-kind: Deployment
-metadata:
-  name: dep
-  annotations:
-    config.kubernetes.io/index: '0'
-    internal.config.kubernetes.io/index: '0'
-    internal.config.kubernetes.io/annotations-migration-resource-id: '0'
-data:
-  slice:
-  - false
-: invalid value type expect a string`,
+			expectedError: `considering field 'data/slice' of object Deployment.v1.apps/dep.[noNs]: invalid value type expect a string`,
 			filter: Filter{
 				MappingFunc: makeMf(map[string]interface{}{
 					"VAR": int64(5),
@@ -271,18 +259,7 @@ metadata:
   name: dep
 data:
   1: str`,
-			expectedError: `considering field 'data' of object
-apiVersion: apps/v1
-kind: Deployment
-metadata:
-  name: dep
-  annotations:
-    config.kubernetes.io/index: '0'
-    internal.config.kubernetes.io/index: '0'
-    internal.config.kubernetes.io/annotations-migration-resource-id: '0'
-data:
-  1: str
-: invalid map key: value='1', tag='` + yaml.NodeTagInt + `'`,
+			expectedError: `considering field 'data' of object Deployment.v1.apps/dep.[noNs]: invalid map key: value='1', tag='` + yaml.NodeTagInt + `'`,
 			filter: Filter{
 				MappingFunc: makeMf(map[string]interface{}{
 					"VAR": int64(5),

api/filters/replacement/replacement.go

@@ -119,13 +119,13 @@ func applyToNode(node *yaml.RNode, value *yaml.RNode, target *types.TargetSelect
 		if target.Options != nil && target.Options.Create {
 			t, err = node.Pipe(yaml.LookupCreate(value.YNode().Kind, fieldPath...))
 		} else {
-			t, err = node.Pipe(yaml.Lookup(fieldPath...))
+			t, err = node.Pipe(&yaml.PathMatcher{Path: fieldPath})
 		}
 		if err != nil {
 			return err
 		}
 		if t != nil {
-			if err = setTargetValue(target.Options, t, value); err != nil {
+			if err = applyToOneNode(target.Options, t, value); err != nil {
 				return err
 			}
 		}
@@ -133,6 +133,27 @@ func applyToNode(node *yaml.RNode, value *yaml.RNode, target *types.TargetSelect
 	return nil
 }
 
+func applyToOneNode(options *types.FieldOptions, t *yaml.RNode, value *yaml.RNode) error {
+	if len(t.YNode().Content) == 0 {
+		if err := setTargetValue(options, t, value); err != nil {
+			return err
+		}
+		return nil
+	}
+
+	for _, scalarNode := range t.YNode().Content {
+		if options != nil && options.Create {
+			return fmt.Errorf("cannot use create option in a multi-value target")
+		}
+		rn := yaml.NewRNode(scalarNode)
+		if err := setTargetValue(options, rn, value); err != nil {
+			return err
+		}
+	}
+
+	return nil
+}
+
 func setTargetValue(options *types.FieldOptions, t *yaml.RNode, value *yaml.RNode) error {
 	value = value.Copy()
 	if options != nil && options.Delimiter != "" {
@@ -152,7 +173,14 @@ func setTargetValue(options *types.FieldOptions, t *yaml.RNode, value *yaml.RNod
 		}
 		value.YNode().Value = strings.Join(tv, options.Delimiter)
 	}
-	t.SetYNode(value.YNode())
+
+	if t.YNode().Kind == yaml.ScalarNode {
+		// For scalar, only copy the value (leave any type intact to auto-convert int->string or string->int)
+		t.YNode().Value = value.YNode().Value
+	} else {
+		t.SetYNode(value.YNode())
+	}
+
 	return nil
 }
 

api/filters/replacement/replacement_test.go

@@ -42,7 +42,7 @@ spec:
   - select:
       kind: Deployment
       name: deploy
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -95,7 +95,7 @@ spec:
   targets:
   - select:
       kind: Deployment
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers
 `,
 			expected: `apiVersion: v1
@@ -205,13 +205,13 @@ spec:
         command: ["printenv"]
         args:
         - example.com
-        - 8080
+        - "8080"
       - name: busybox
         image: busybox:latest
         args:
         - echo
         - example.com
-        - 8080
+        - "8080"
 ---
 apiVersion: v1
 kind: ConfigMap
@@ -328,7 +328,7 @@ spec:
   - select:
       kind: Deployment
       name: deploy1
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.[name=postgresdb].image
 `,
 			expected: `apiVersion: v1
@@ -405,7 +405,7 @@ spec:
   targets:
   - select:
       version: v3
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: my-group-1/v1
@@ -492,7 +492,7 @@ spec:
   targets:
   - select:
       name: my-name-2
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `spec:
@@ -582,7 +582,7 @@ spec:
     reject:
     - name: deploy2
     - name: deploy3
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -662,7 +662,7 @@ spec:
     reject:
     - kind: Deployment
       name: my-name
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -731,7 +731,7 @@ spec:
     reject:
     - kind: Deployment
     - name: my-name
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -799,7 +799,7 @@ spec:
   - select:
       kind: Deployment
       name: deploy1
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
     options:
       delimiter: ':'
@@ -872,7 +872,7 @@ spec:
   - select:
       kind: Pod
       name: pod2
-    fieldPaths: 
+    fieldPaths:
     - spec.volumes.0.projected.sources.0.configMap.items.0.path
     options:
       delimiter: '/'
@@ -948,7 +948,7 @@ spec:
   - select:
       kind: Pod
       name: pod1
-    fieldPaths: 
+    fieldPaths:
     - spec.volumes.0.projected.sources.0.configMap.items.0.path
     options:
       delimiter: '/'
@@ -1024,7 +1024,7 @@ spec:
   - select:
       kind: Pod
       name: pod1
-    fieldPaths: 
+    fieldPaths:
     - spec.volumes.0.projected.sources.0.configMap.items.0.path
     options:
       delimiter: '/'
@@ -1100,7 +1100,7 @@ spec:
   - select:
       kind: Pod
       name: pod1
-    fieldPaths: 
+    fieldPaths:
     - spec.volumes.0.projected.sources.0.configMap.items.0.path
     options:
       delimiter: '/'
@@ -1176,7 +1176,7 @@ spec:
   - select:
       kind: Pod
       name: pod1
-    fieldPaths: 
+    fieldPaths:
     - spec.volumes.0.projected.sources.0.configMap.items.0.path
     options:
       delimiter: '/'
@@ -1212,7 +1212,7 @@ metadata:
   targets:
   - select:
       name: deploy1
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers
     options:
       create: true
@@ -1223,7 +1223,7 @@ metadata:
   targets:
   - select:
       name: deploy2
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers
 `,
 			expected: `apiVersion: v1
@@ -1285,12 +1285,12 @@ spec:
     kind: Pod
     name: pod
     fieldPath: spec.containers
-    options: 
+    options:
       delimiter: "/"
   targets:
   - select:
       kind: Deployment
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers
 `,
 			expectedErr: "delimiter option can only be used with scalar nodes",
@@ -1331,9 +1331,9 @@ spec:
   targets:
   - select:
       kind: Deployment
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers
-    options: 
+    options:
       delimiter: "/"
 `,
 			expectedErr: "delimiter option can only be used with scalar nodes",
@@ -1354,7 +1354,7 @@ metadata:
   targets:
   - select:
       name: custom
-    fieldPaths: 
+    fieldPaths:
     - metadata.annotations.[f.g.h/i-j]
 `,
 			expected: `apiVersion: v1
@@ -1431,6 +1431,208 @@ spec:
     name: second
     version: latest
     property: second`,
+		},
+		"one replacements target has multiple value": {
+			input: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: XXXXX
+        - name: foo
+          value: bar
+      - image: nginx
+        name: sidecar
+        env:
+        - name: deployment-name
+          value: YYYYY
+`,
+			replacements: `replacements:
+- source:
+    kind: Deployment
+    name: sample-deploy
+    fieldPath: metadata.name
+  targets:
+  - select:
+      kind: Deployment
+    fieldPaths:
+    - spec.template.spec.containers.[image=nginx].env.[name=deployment-name].value
+`,
+			expected: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: sample-deploy
+        - name: foo
+          value: bar
+      - image: nginx
+        name: sidecar
+        env:
+        - name: deployment-name
+          value: sample-deploy`,
+		},
+		"index contains '*' character": {
+			input: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: XXXXX
+`,
+			replacements: `replacements:
+- source:
+    kind: Deployment
+    name: sample-deploy
+    fieldPath: metadata.name
+  targets:
+  - select:
+      kind: Deployment
+    fieldPaths:
+    - spec.template.spec.containers.*.env.[name=deployment-name].value
+`,
+			expected: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: sample-deploy`,
+		},
+		"list index contains '*' character": {
+			input: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: XXXXX
+        - name: foo
+          value: bar
+      - image: nginx
+        name: sidecar
+        env:
+        - name: deployment-name
+          value: YYYYY
+`,
+			replacements: `replacements:
+- source:
+    kind: Deployment
+    name: sample-deploy
+    fieldPath: metadata.name
+  targets:
+  - select:
+      kind: Deployment
+    fieldPaths:
+    - spec.template.spec.containers.*.env.[name=deployment-name].value
+`,
+			expected: `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  labels:
+    app: sample-deploy
+  name: sample-deploy
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: sample-deploy
+  template:
+    metadata:
+      labels:
+        app: sample-deploy
+    spec:
+      containers:
+      - image: nginx
+        name: main
+        env:
+        - name: deployment-name
+          value: sample-deploy
+        - name: foo
+          value: bar
+      - image: nginx
+        name: sidecar
+        env:
+        - name: deployment-name
+          value: sample-deploy`,
 		},
 		"multiple field paths in target": {
 			input: `apiVersion: v1
@@ -1513,7 +1715,7 @@ spec:
 kind: Deployment
 metadata:
   name: pre-deploy
-  annotations: 
+  annotations:
     internal.config.kubernetes.io/previousNames: deploy,deploy
     internal.config.kubernetes.io/previousKinds: CronJob,Deployment
     internal.config.kubernetes.io/previousNamespaces: default,default
@@ -1535,7 +1737,7 @@ spec:
   - select:
       kind: Deployment
       name: deploy
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -1556,7 +1758,6 @@ spec:
         name: postgresdb
 `,
 		},
-
 		"replacement source.fieldPath does not exist": {
 			input: `apiVersion: v1
 kind: ConfigMap
@@ -1628,7 +1829,7 @@ spec:
   targets:
   - select:
       annotationSelector: foo=bar-1
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -1702,7 +1903,7 @@ spec:
   targets:
   - select:
       labelSelector: foo=bar-1
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -1778,7 +1979,7 @@ spec:
       kind: Deployment
     reject:
     - labelSelector: foo=bar-2
-    fieldPaths: 
+    fieldPaths:
     - spec.template.spec.containers.1.image
 `,
 			expected: `apiVersion: v1
@@ -1810,6 +2011,310 @@ spec:
         name: nginx-tagged
       - image: postgres:1.8.0
         name: postgresdb
+`,
+		},
+		"string source -> integer target": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "8080"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 80
+`,
+			replacements: `replacements:
+- source:
+    kind: ConfigMap
+    name: config
+    fieldPath: data.PORT
+  targets:
+  - select:
+      kind: Pod
+    fieldPaths:
+    - spec.containers.0.ports.0.containerPort
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "8080"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 8080
+`,
+		},
+		"string source -> boolean target": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  MOUNT_TOKEN: "true"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    automountServiceAccountToken: false
+`,
+			replacements: `replacements:
+- source:
+    kind: ConfigMap
+    name: config
+    fieldPath: data.MOUNT_TOKEN
+  targets:
+  - select:
+      kind: Pod
+    fieldPaths:
+    - spec.containers.0.automountServiceAccountToken
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  MOUNT_TOKEN: "true"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    automountServiceAccountToken: true
+`,
+		},
+		// TODO: This is inconsistent with expectations; creating a numerical string would be
+		// expected, unless we had knowledge of the intended type of the field to be
+		// created.
+		"numerical string source -> integer creation": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "8080"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - protocol: TCP
+`,
+			replacements: `replacements:
+- source:
+    kind: ConfigMap
+    name: config
+    fieldPath: data.PORT
+  targets:
+  - select:
+      kind: Pod
+    fieldPaths:
+    - spec.containers.0.ports.0.containerPort
+    - spec.containers.0.ports.0.name
+    options:
+      create: true
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "8080"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - protocol: TCP
+      containerPort: 8080
+      name: 8080
+`,
+		},
+		"integer source -> string target": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "8080"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 80
+`,
+			replacements: `replacements:
+- source:
+    kind: Pod
+    name: pod
+    fieldPath: spec.containers.0.ports.0.containerPort
+  targets:
+  - select:
+      kind: ConfigMap
+    fieldPaths:
+    - data.PORT
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  PORT: "80"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 80
+`,
+		},
+		"boolean source -> string target": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  MOUNT_TOKEN: "true"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    automountServiceAccountToken: false
+`,
+			replacements: `replacements:
+- source:
+    kind: Pod
+    name: pod
+    fieldPath: spec.containers.0.automountServiceAccountToken
+  targets:
+  - select:
+      kind: ConfigMap
+    fieldPaths:
+    - data.MOUNT_TOKEN
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  MOUNT_TOKEN: "false"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    automountServiceAccountToken: false
+`,
+		},
+		// TODO: This result is expected, but we should create a string and not an
+		// integer if we could know that the target type should be one. As a result,
+		// the actual ConfigMap produces here cannot be applied.
+		"integer source -> integer creation": {
+			input: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  FOO: "Bar"
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 80
+`,
+			replacements: `replacements:
+- source:
+    kind: Pod
+    name: pod
+    fieldPath: spec.containers.0.ports.0.containerPort
+  targets:
+  - select:
+      kind: ConfigMap
+    fieldPaths:
+    - data.PORT
+    options:
+      create: true
+`,
+			expected: `apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: config
+data:
+  FOO: "Bar"
+  PORT: 80
+---
+apiVersion: apps/v1
+kind: Pod
+metadata:
+  name: pod
+spec:
+  containers:
+  - image: busybox
+    name: myapp-container
+    ports:
+    - containerPort: 80
 `,
 		},
 	}

api/filters/replicacount/replicacount.go

@@ -14,9 +14,17 @@ import (
 type Filter struct {
 	Replica   types.Replica   `json:"replica,omitempty" yaml:"replica,omitempty"`
 	FieldSpec types.FieldSpec `json:"fieldSpec,omitempty" yaml:"fieldSpec,omitempty"`
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (rc *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	rc.trackableSetter.WithMutationTracker(callback)
+}
 
 func (rc Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	return kio.FilterAll(yaml.FilterFunc(rc.run)).Filter(nodes)
@@ -33,5 +41,5 @@ func (rc Filter) run(node *yaml.RNode) (*yaml.RNode, error) {
 }
 
 func (rc Filter) set(node *yaml.RNode) error {
-	return filtersutil.SetScalar(strconv.FormatInt(rc.Replica.Count, 10))(node)
+	return rc.trackableSetter.SetEntry("", strconv.FormatInt(rc.Replica.Count, 10), yaml.NodeTagInt)(node)
 }

api/filters/replicacount/replicacount_test.go

@@ -7,14 +7,17 @@ import (
 	"github.com/stretchr/testify/assert"
 	filtertest_test "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 func TestFilter(t *testing.T) {
-
+	mutationTrackerStub := filtertest_test.MutationTrackerStub{}
 	testCases := map[string]struct {
-		input    string
-		expected string
-		filter   Filter
+		input                string
+		expected             string
+		filter               Filter
+		mutationTracker      func(key, value, tag string, node *yaml.RNode)
+		expectedSetValueArgs []filtertest_test.SetValueArg
 	}{
 		"update field": {
 			input: `
@@ -161,9 +164,44 @@ spec:
 				FieldSpec: types.FieldSpec{Path: "spec/template/replicas"},
 			},
 		},
+		"mutation tracker": {
+			input: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+spec:
+  replicas: 5
+`,
+			expected: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+spec:
+  replicas: 42
+`,
+			filter: Filter{
+				Replica: types.Replica{
+					Name:  "dep",
+					Count: 42,
+				},
+				FieldSpec: types.FieldSpec{Path: "spec/replicas"},
+			},
+			mutationTracker: mutationTrackerStub.MutationTracker,
+			expectedSetValueArgs: []filtertest_test.SetValueArg{
+				{
+					Value:    "42",
+					Tag:      "!!int",
+					NodePath: []string{"spec", "replicas"},
+				},
+			},
+		},
 	}
 
 	for tn, tc := range testCases {
+		mutationTrackerStub.Reset()
+		tc.filter.WithMutationTracker(tc.mutationTracker)
 		t.Run(tn, func(t *testing.T) {
 			if !assert.Equal(t,
 				strings.TrimSpace(tc.expected),
@@ -171,6 +209,7 @@ spec:
 					filtertest_test.RunFilter(t, tc.input, tc.filter))) {
 				t.FailNow()
 			}
+			assert.Equal(t, tc.expectedSetValueArgs, mutationTrackerStub.SetValueArgs())
 		})
 	}
 }

api/filters/suffix/suffix.go

@@ -18,9 +18,17 @@ type Filter struct {
 	Suffix string `json:"suffix,omitempty" yaml:"suffix,omitempty"`
 
 	FieldSpec types.FieldSpec `json:"fieldSpec,omitempty" yaml:"fieldSpec,omitempty"`
+
+	trackableSetter filtersutil.TrackableSetter
 }
 
 var _ kio.Filter = Filter{}
+var _ kio.TrackableFilter = &Filter{}
+
+// WithMutationTracker registers a callback which will be invoked each time a field is mutated
+func (f *Filter) WithMutationTracker(callback func(key, value, tag string, node *yaml.RNode)) {
+	f.trackableSetter.WithMutationTracker(callback)
+}
 
 func (f Filter) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {
 	return kio.FilterAll(yaml.FilterFunc(f.run)).Filter(nodes)
@@ -37,6 +45,6 @@ func (f Filter) run(node *yaml.RNode) (*yaml.RNode, error) {
 }
 
 func (f Filter) evaluateField(node *yaml.RNode) error {
-	return filtersutil.SetScalar(fmt.Sprintf(
+	return f.trackableSetter.SetScalar(fmt.Sprintf(
 		"%s%s", node.YNode().Value, f.Suffix))(node)
 }

api/filters/suffix/suffix_test.go

@@ -11,8 +11,11 @@ import (
 	"sigs.k8s.io/kustomize/api/filters/suffix"
 	filtertest_test "sigs.k8s.io/kustomize/api/testutils/filtertest"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
+var mutationTrackerStub = filtertest_test.MutationTrackerStub{}
+
 var tests = map[string]TestCase{
 	"suffix": {
 		input: `
@@ -83,17 +86,61 @@ a:
 			FieldSpec: types.FieldSpec{Path: "a/b/c"},
 		},
 	},
+
+	"mutation tracker": {
+		input: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: instance
+`,
+		expected: `
+apiVersion: example.com/v1
+kind: Foo
+metadata:
+  name: instance-foo
+---
+apiVersion: example.com/v1
+kind: Bar
+metadata:
+  name: instance-foo
+`,
+		filter: suffix.Filter{
+			Suffix:    "-foo",
+			FieldSpec: types.FieldSpec{Path: "metadata/name"},
+		},
+		mutationTracker: mutationTrackerStub.MutationTracker,
+		expectedSetValueArgs: []filtertest_test.SetValueArg{
+			{
+				Value:    "instance-foo",
+				NodePath: []string{"metadata", "name"},
+			},
+			{
+				Value:    "instance-foo",
+				NodePath: []string{"metadata", "name"},
+			},
+		},
+	},
 }
 
 type TestCase struct {
-	input    string
-	expected string
-	filter   suffix.Filter
+	input                string
+	expected             string
+	filter               suffix.Filter
+	mutationTracker      func(key, value, tag string, node *yaml.RNode)
+	expectedSetValueArgs []filtertest_test.SetValueArg
 }
 
 func TestFilter(t *testing.T) {
 	for name := range tests {
+		mutationTrackerStub.Reset()
 		test := tests[name]
+		test.filter.WithMutationTracker(test.mutationTracker)
 		t.Run(name, func(t *testing.T) {
 			if !assert.Equal(t,
 				strings.TrimSpace(test.expected),
@@ -101,6 +148,7 @@ func TestFilter(t *testing.T) {
 					filtertest_test.RunFilter(t, test.input, test.filter))) {
 				t.FailNow()
 			}
+			assert.Equal(t, test.expectedSetValueArgs, mutationTrackerStub.SetValueArgs())
 		})
 	}
 }

api/go.mod

@@ -8,11 +8,9 @@ require (
 	github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510
 	github.com/imdario/mergo v0.3.5
 	github.com/pkg/errors v0.9.1
-	github.com/stretchr/testify v1.5.1
+	github.com/stretchr/testify v1.7.0
 	gopkg.in/yaml.v2 v2.4.0
 	k8s.io/kube-openapi v0.0.0-20210421082810-95288971da7e
-	sigs.k8s.io/kustomize/kyaml v0.13.0
+	sigs.k8s.io/kustomize/kyaml v0.13.6
 	sigs.k8s.io/yaml v1.2.0
 )
-
-replace sigs.k8s.io/kustomize/kyaml => ../kyaml

api/go.sum

@@ -1,44 +1,89 @@
 cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=
+cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=
+cloud.google.com/go v0.38.0/go.mod h1:990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU=
+cloud.google.com/go v0.44.1/go.mod h1:iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU=
+cloud.google.com/go v0.44.2/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY=
+cloud.google.com/go v0.45.1/go.mod h1:RpBamKRgapWJb87xiFSdk4g1CME7QZg3uwTez+TSTjc=
+cloud.google.com/go v0.46.3/go.mod h1:a6bKKbmY7er1mI7TEI4lsAkts/mkhTSZK8w33B4RAg0=
+cloud.google.com/go v0.50.0/go.mod h1:r9sluTvynVuxRIOHXQEHMFffphuXHOMZMycpNR5e6To=
+cloud.google.com/go v0.52.0/go.mod h1:pXajvRH/6o3+F9jDHZWQ5PbGhn+o8w9qiu/CffaVdO4=
+cloud.google.com/go v0.53.0/go.mod h1:fp/UouUEsRkN6ryDKNW/Upv/JBKnv6WDthjR6+vze6M=
+cloud.google.com/go v0.54.0/go.mod h1:1rq2OEkV3YMf6n/9ZvGWI3GWw0VoqH/1x2nd8Is/bPc=
+cloud.google.com/go v0.56.0/go.mod h1:jr7tqZxxKOVYizybht9+26Z/gUq7tiRzu+ACVAMbKVk=
+cloud.google.com/go v0.57.0/go.mod h1:oXiQ6Rzq3RAkkY7N6t3TcE6jE+CIBBbA36lwQ1JyzZs=
+cloud.google.com/go v0.62.0/go.mod h1:jmCYTdRCQuc1PHIIJ/maLInMho30T/Y0M4hTdTShOYc=
+cloud.google.com/go v0.65.0/go.mod h1:O5N8zS7uWy9vkA9vayVHs65eM1ubvY4h553ofrNHObY=
+cloud.google.com/go v0.72.0/go.mod h1:M+5Vjvlc2wnp6tjzE102Dw08nGShTscUx2nZMufOKPI=
+cloud.google.com/go v0.74.0/go.mod h1:VV1xSbzvo+9QJOxLDaJfTjx5e+MePCpCWwvftOeQmWk=
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-gopkg.in/alecthomas/kingpin.v2 v2.2.6/go.mod h1:FMv+mEhP44yOT+4EoQTLFTRgOQ1FBLkstjWtayDeSgw=
+google.golang.org/protobuf v1.23.1-0.20200526195155-81db48ad09cc/go.mod h1:EGpADcykh3NcUnDUJcl1+ZksZNG86OlYog2l/sGQquU=
+google.golang.org/protobuf v1.24.0/go.mod h1:r/3tXBNzIEhYS9I1OUVjXDlt8tc493IdKGjtUeSXeh4=
+google.golang.org/protobuf v1.25.0/go.mod h1:9JNX74DMeImyA3h4bdi1ymwjUzf21/xIlbajtzgsN7c=
+google.golang.org/protobuf v1.26.0-rc.1/go.mod h1:jlhhOSvTdKEhbULTjvd4ARK9grFBp09yW+WbY/TyQbw=
+google.golang.org/protobuf v1.26.0 h1:bxAC2xTBsZGibn2RTntX0oH50xLsqy1OxA9tTL3p/lk=
+google.golang.org/protobuf v1.26.0/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc=
 gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
 gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo=
 gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
-gopkg.in/resty.v1 v1.12.0/go.mod h1:mDo4pnntr5jdWRML875a/NmxYqAlA73dVijT2AXvQQo=
-gopkg.in/yaml.v2 v2.0.0-20170812160011-eb3733d160e7/go.mod h1:JAlM8MvJe8wmxCU4Bli9HhUf9+ttbYbLASfIpnQbh74=
+gopkg.in/errgo.v2 v2.1.0/go.mod h1:hNsd1EY+bozCKY1Ytp96fpM3vjJbqLJn88ws8XvfDNI=
+gopkg.in/ini.v1 v1.62.0/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k=
 gopkg.in/yaml.v2 v2.2.1/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
+gopkg.in/yaml.v2 v2.2.3/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.2.8/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v2 v2.4.0 h1:D8xgwECY7CYvx+Y2n4sBz93Jn9JRvxdiyyo8CTfuKaY=
 gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ=
+gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 gopkg.in/yaml.v3 v3.0.0-20200615113413-eeeca48fe776/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
+gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b h1:h8qDotaEPuJATrMmW04NCwg7v22aHH28wwpauUhK9Oo=
+gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
+honnef.co/go/tools v0.0.0-20190106161140-3f1c8253044a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
+honnef.co/go/tools v0.0.0-20190418001031-e561f6794a2a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
+honnef.co/go/tools v0.0.0-20190523083050-ea95bdfd59fc/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
+honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg=
+honnef.co/go/tools v0.0.1-2020.1.3/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k=
+honnef.co/go/tools v0.0.1-2020.1.4/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k=
 k8s.io/gengo v0.0.0-20200413195148-3a45101e95ac/go.mod h1:ezvh/TsK7cY6rbqRK0oQQ8IAqLxYwwyPxAX1Pzy0ii0=
 k8s.io/klog/v2 v2.0.0/go.mod h1:PBfzABfn139FHAV07az/IF9Wp1bkk3vpT2XSJ76fSDE=
 k8s.io/kube-openapi v0.0.0-20210421082810-95288971da7e h1:KLHHjkdQFomZy8+06csTWZ0m1343QqxZhR2LJ1OxCYM=
 k8s.io/kube-openapi v0.0.0-20210421082810-95288971da7e/go.mod h1:vHXdDvt9+2spS2Rx9ql3I8tycm3H9FDfdUoIuKCefvw=
+rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8=
+rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0=
+rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA=
+sigs.k8s.io/kustomize/kyaml v0.13.6 h1:eF+wsn4J7GOAXlvajv6OknSunxpcOBQQqsnPxObtkGs=
+sigs.k8s.io/kustomize/kyaml v0.13.6/go.mod h1:yHP031rn1QX1lr/Xd934Ri/xdVNG8BE2ECa78Ht/kEg=
 sigs.k8s.io/structured-merge-diff/v4 v4.0.2/go.mod h1:bJZC9H9iH24zzfZ/41RGcq60oK1F7G282QMXDPYydCw=
 sigs.k8s.io/yaml v1.2.0 h1:kr/MCeFWJWTwyaHoR9c8EjH9OumOmoF9YGiZd7lFm/Q=
 sigs.k8s.io/yaml v1.2.0/go.mod h1:yfXDCHCao9+ENCvLSE62v9VSji2MKu5jeNfTrofGhJc=

api/image/image.go

@@ -14,37 +14,53 @@ func IsImageMatched(s, t string) bool {
 	// Tag values are limited to [a-zA-Z0-9_.{}-].
 	// Some tools like Bazel rules_k8s allow tag patterns with {} characters.
 	// More info: https://github.com/bazelbuild/rules_k8s/pull/423
-	pattern, _ := regexp.Compile("^" + t + "(@sha256)?(:[a-zA-Z0-9_.{}-]*)?$")
+	pattern, _ := regexp.Compile("^" + t + "(:[a-zA-Z0-9_.{}-]*)?(@sha256:[a-zA-Z0-9_.{}-]*)?$")
 	return pattern.MatchString(s)
 }
 
 // Split separates and returns the name and tag parts
 // from the image string using either colon `:` or at `@` separators.
-// Note that the returned tag keeps its separator.
-func Split(imageName string) (name string, tag string) {
+// image reference pattern: [[host[:port]/]component/]component[:tag][@digest]
+func Split(imageName string) (name string, tag string, digest string) {
 	// check if image name contains a domain
 	// if domain is present, ignore domain and check for `:`
-	ic := -1
-	if slashIndex := strings.Index(imageName, "/"); slashIndex < 0 {
-		ic = strings.LastIndex(imageName, ":")
+	searchName := imageName
+	slashIndex := strings.Index(imageName, "/")
+	if slashIndex > 0 {
+		searchName = imageName[slashIndex:]
 	} else {
-		lastIc := strings.LastIndex(imageName[slashIndex:], ":")
-		// set ic only if `:` is present
-		if lastIc > 0 {
-			ic = slashIndex + lastIc
-		}
-	}
-	ia := strings.LastIndex(imageName, "@")
-	if ic < 0 && ia < 0 {
-		return imageName, ""
+		slashIndex = 0
 	}
 
-	i := ic
-	if ia > 0 {
-		i = ia
+	id := strings.Index(searchName, "@")
+	ic := strings.Index(searchName, ":")
+
+	// no tag or digest
+	if ic < 0 && id < 0 {
+		return imageName, "", ""
 	}
 
-	name = imageName[:i]
-	tag = imageName[i:]
-	return
+	// digest only
+	if id >= 0 && (id < ic || ic < 0) {
+		id += slashIndex
+		name = imageName[:id]
+		digest = strings.TrimPrefix(imageName[id:], "@")
+		return name, "", digest
+	}
+
+	// tag and digest
+	if id >= 0 && ic >= 0 {
+		id += slashIndex
+		ic += slashIndex
+		name = imageName[:ic]
+		tag = strings.TrimPrefix(imageName[ic:id], ":")
+		digest = strings.TrimPrefix(imageName[id:], "@")
+		return name, tag, digest
+	}
+
+	// tag only
+	ic += slashIndex
+	name = imageName[:ic]
+	tag = strings.TrimPrefix(imageName[ic:], ":")
+	return name, tag, ""
 }

api/image/image_test.go

@@ -23,11 +23,23 @@ func TestIsImageMatched(t *testing.T) {
 			isMatched: true,
 		},
 		{
-			testName:  "name is match",
+			testName:  "name is match with tag",
 			value:     "nginx:12345",
 			name:      "nginx",
 			isMatched: true,
 		},
+		{
+			testName:  "name is match with digest",
+			value:     "nginx@sha256:xyz",
+			name:      "nginx",
+			isMatched: true,
+		},
+		{
+			testName:  "name is match with tag and digest",
+			value:     "nginx:12345@sha256:xyz",
+			name:      "nginx",
+			isMatched: true,
+		},
 		{
 			testName:  "name is not a match",
 			value:     "apache:12345",
@@ -49,32 +61,65 @@ func TestSplit(t *testing.T) {
 		value    string
 		name     string
 		tag      string
+		digest   string
 	}{
 		{
 			testName: "no tag",
 			value:    "nginx",
 			name:     "nginx",
 			tag:      "",
+			digest:   "",
 		},
 		{
 			testName: "with tag",
 			value:    "nginx:1.2.3",
 			name:     "nginx",
-			tag:      ":1.2.3",
+			tag:      "1.2.3",
+			digest:   "",
 		},
 		{
 			testName: "with digest",
-			value:    "nginx@12345",
+			value:    "nginx@sha256:12345",
 			name:     "nginx",
-			tag:      "@12345",
+			tag:      "",
+			digest:   "sha256:12345",
+		},
+		{
+			testName: "with tag and digest",
+			value:    "nginx:1.2.3@sha256:12345",
+			name:     "nginx",
+			tag:      "1.2.3",
+			digest:   "sha256:12345",
+		},
+		{
+			testName: "with domain",
+			value:    "docker.io/nginx:1.2.3",
+			name:     "docker.io/nginx",
+			tag:      "1.2.3",
+			digest:   "",
+		},
+		{
+			testName: "with domain and port",
+			value:    "foo.com:443/nginx:1.2.3",
+			name:     "foo.com:443/nginx",
+			tag:      "1.2.3",
+			digest:   "",
+		},
+		{
+			testName: "with domain, port, tag and digest",
+			value:    "foo.com:443/nginx:1.2.3@sha256:12345",
+			name:     "foo.com:443/nginx",
+			tag:      "1.2.3",
+			digest:   "sha256:12345",
 		},
 	}
 
 	for _, tc := range testCases {
 		t.Run(tc.testName, func(t *testing.T) {
-			name, tag := Split(tc.value)
+			name, tag, digest := Split(tc.value)
 			assert.Equal(t, tc.name, name)
 			assert.Equal(t, tc.tag, tag)
+			assert.Equal(t, tc.digest, digest)
 		})
 	}
 }

api/internal/accumulator/namereferencetransformer.go

@@ -52,7 +52,10 @@ func (t *nameReferenceTransformer) Transform(m resmap.ResMap) error {
 	fMap := t.determineFilters(m.Resources())
 	debug(fMap)
 	for r, fList := range fMap {
-		c := m.SubsetThatCouldBeReferencedByResource(r)
+		c, err := m.SubsetThatCouldBeReferencedByResource(r)
+		if err != nil {
+			return err
+		}
 		for _, f := range fList {
 			f.Referrer = r
 			f.ReferralCandidates = c

api/internal/accumulator/namereferencetransformer_test.go

@@ -520,19 +520,10 @@ func TestNameReferenceUnhappyRun(t *testing.T) {
 						},
 					},
 				}).ResMap(),
-			expectedErr: `updating name reference in 'rules/resourceNames' field of ` +
-				`'ClusterRole.v1.rbac.authorization.k8s.io/cr.[noNs]'` +
-				`: considering field 'rules/resourceNames' of object
-apiVersion: rbac.authorization.k8s.io/v1
-kind: ClusterRole
-metadata:
-  name: cr
-rules:
-- resourceNames:
-    foo: bar
-  resources:
-  - secrets
-: visit traversal on path: [resourceNames]: path config error; no 'name' field in node`},
+			expectedErr: `updating name reference in 'rules/resourceNames' field of 'ClusterRole.v1.rbac.authorization.k8s.io/cr.[noNs]': ` +
+				`considering field 'rules/resourceNames' of object ClusterRole.v1.rbac.authorization.k8s.io/cr.[noNs]: visit traversal on ` +
+				`path: [resourceNames]: path config error; no 'name' field in node`,
+		},
 	}
 
 	nrt := newNameReferenceTransformer(builtinconfig.MakeDefaultConfig().NameReference)

api/internal/accumulator/refvartransformer_test.go

@@ -120,15 +120,7 @@ func TestRefVarTransformer(t *testing.T) {
 							"slice": []interface{}{5}, // noticeably *not* a []string
 						}}).ResMap(),
 			},
-			errMessage: `considering field 'data/slice' of object
-apiVersion: v1
-data:
-  slice:
-  - 5
-kind: ConfigMap
-metadata:
-  name: cm1
-: invalid value type expect a string`,
+			errMessage: `considering field 'data/slice' of object ConfigMap.v1.[noGrp]/cm1.[noNs]: invalid value type expect a string`,
 		},
 		"var replacement in nil": {
 			given: given{

api/internal/builtins/PrefixTransformer.go

@@ -19,6 +19,7 @@ type PrefixTransformerPlugin struct {
 	FieldSpecs types.FsSlice `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
 }
 
+// TODO: Make this gvk skip list part of the config.
 var prefixFieldSpecsToSkip = types.FsSlice{
 	{Gvk: resid.Gvk{Kind: "CustomResourceDefinition"}},
 	{Gvk: resid.Gvk{Group: "apiregistration.k8s.io", Kind: "APIService"}},

api/internal/builtins/ReplacementTransformer.go

@@ -5,6 +5,7 @@ package builtins
 
 import (
 	"fmt"
+	"reflect"
 
 	"sigs.k8s.io/kustomize/api/filters/replacement"
 	"sigs.k8s.io/kustomize/api/resmap"
@@ -35,11 +36,29 @@ func (p *ReplacementTransformerPlugin) Config(
 			if err != nil {
 				return err
 			}
-			repl := types.Replacement{}
-			if err := yaml.Unmarshal(content, &repl); err != nil {
+			// find if the path contains a a list of replacements or a single replacement
+			var replacement interface{}
+			err = yaml.Unmarshal(content, &replacement)
+			if err != nil {
 				return err
 			}
-			p.Replacements = append(p.Replacements, repl)
+			items := reflect.ValueOf(replacement)
+			switch items.Kind() {
+			case reflect.Slice:
+				repl := []types.Replacement{}
+				if err := yaml.Unmarshal(content, &repl); err != nil {
+					return err
+				}
+				p.Replacements = append(p.Replacements, repl...)
+			case reflect.Map:
+				repl := types.Replacement{}
+				if err := yaml.Unmarshal(content, &repl); err != nil {
+					return err
+				}
+				p.Replacements = append(p.Replacements, repl)
+			default:
+				return fmt.Errorf("unsupported replacement type encountered within replacement path: %v", items.Kind())
+			}
 		} else {
 			// replacement information is already loaded
 			p.Replacements = append(p.Replacements, r.Replacement)

api/internal/builtins/SuffixTransformer.go

@@ -19,6 +19,7 @@ type SuffixTransformerPlugin struct {
 	FieldSpecs types.FsSlice `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
 }
 
+// TODO: Make this gvk skip list part of the config.
 var suffixFieldSpecsToSkip = types.FsSlice{
 	{Gvk: resid.Gvk{Kind: "CustomResourceDefinition"}},
 	{Gvk: resid.Gvk{Group: "apiregistration.k8s.io", Kind: "APIService"}},

api/internal/generators/configmap_test.go

@@ -140,7 +140,7 @@ metadata:
     foo: 'bar'
 data:
   a: x
-  b: y
+  b: "y"
   c: Hello World
   d: "true"
 `,
@@ -181,7 +181,7 @@ metadata:
     river: 'Missouri'
 data:
   a: x
-  b: y
+  b: "y"
   c: Hello World
   d: "true"
 immutable: true

api/internal/generators/utils.go

@@ -5,7 +5,6 @@ package generators
 
 import (
 	"fmt"
-	"strings"
 
 	"github.com/go-errors/errors"
 	"sigs.k8s.io/kustomize/api/ifc"
@@ -51,11 +50,7 @@ func makeValidatedDataMap(
 			return nil, errors.Errorf(
 				"configmap %s illegally repeats the key `%s`", name, p.Key)
 		}
-		lines := strings.Split(p.Value, "\n")
-		for i := range lines {
-			lines[i] = strings.TrimSuffix(lines[i], " ")
-		}
-		knownKeys[p.Key] = strings.Join(lines, "\n")
+		knownKeys[p.Key] = p.Value
 	}
 	return knownKeys, nil
 }
@@ -88,9 +83,15 @@ func setImmutable(
 		return nil
 	}
 	if opts.Immutable {
-		if _, err := rn.Pipe(yaml.SetField("immutable", yaml.NewScalarRNode("true"))); err != nil {
+		n := &yaml.Node{
+			Kind:  yaml.ScalarNode,
+			Value: "true",
+			Tag:   yaml.NodeTagBool,
+		}
+		if _, err := rn.Pipe(yaml.FieldSetter{Name: "immutable", Value: yaml.NewRNode(n)}); err != nil {
 			return err
 		}
 	}
+
 	return nil
 }

api/internal/kusterr/yamlformaterror.go

@@ -19,6 +19,16 @@ func (e YamlFormatError) Error() string {
 	return fmt.Sprintf("YAML file [%s] encounters a format error.\n%s\n", e.Path, e.ErrorMsg)
 }
 
+// MalformedYamlError represents an error that occurred while trying to decode a given YAML.
+type MalformedYamlError struct {
+	Path     string
+	ErrorMsg string
+}
+
+func (e MalformedYamlError) Error() string {
+	return fmt.Sprintf("%s in File: %s", e.ErrorMsg, e.Path)
+}
+
 // Handler handles YamlFormatError
 func Handler(e error, path string) error {
 	if isYAMLSyntaxError(e) {
@@ -27,9 +37,19 @@ func Handler(e error, path string) error {
 			ErrorMsg: e.Error(),
 		}
 	}
+	if IsMalformedYAMLError(e) {
+		return MalformedYamlError{
+			Path:     path,
+			ErrorMsg: e.Error(),
+		}
+	}
 	return e
 }
 
 func isYAMLSyntaxError(e error) bool {
 	return strings.Contains(e.Error(), "error converting YAML to JSON") || strings.Contains(e.Error(), "error unmarshaling JSON")
 }
+
+func IsMalformedYAMLError(e error) bool {
+	return strings.Contains(e.Error(), "MalformedYAMLError")
+}

api/internal/plugins/loader/loader.go

@@ -53,14 +53,18 @@ func (l *Loader) SetWorkDir(wd string) {
 }
 
 func (l *Loader) LoadGenerators(
-	ldr ifc.Loader, v ifc.Validator, rm resmap.ResMap) ([]resmap.Generator, error) {
-	var result []resmap.Generator
+	ldr ifc.Loader, v ifc.Validator, rm resmap.ResMap) (
+	result []*resmap.GeneratorWithProperties, err error) {
 	for _, res := range rm.Resources() {
 		g, err := l.LoadGenerator(ldr, v, res)
 		if err != nil {
 			return nil, err
 		}
-		result = append(result, g)
+		generatorOrigin, err := resource.OriginFromCustomPlugin(res)
+		if err != nil {
+			return nil, err
+		}
+		result = append(result, &resmap.GeneratorWithProperties{Generator: g, Origin: generatorOrigin})
 	}
 	return result, nil
 }
@@ -79,20 +83,24 @@ func (l *Loader) LoadGenerator(
 }
 
 func (l *Loader) LoadTransformers(
-	ldr ifc.Loader, v ifc.Validator, rm resmap.ResMap) ([]resmap.Transformer, error) {
-	var result []resmap.Transformer
+	ldr ifc.Loader, v ifc.Validator, rm resmap.ResMap) ([]*resmap.TransformerWithProperties, error) {
+	var result []*resmap.TransformerWithProperties
 	for _, res := range rm.Resources() {
 		t, err := l.LoadTransformer(ldr, v, res)
 		if err != nil {
 			return nil, err
 		}
-		result = append(result, t)
+		transformerOrigin, err := resource.OriginFromCustomPlugin(res)
+		if err != nil {
+			return nil, err
+		}
+		result = append(result, &resmap.TransformerWithProperties{Transformer: t, Origin: transformerOrigin})
 	}
 	return result, nil
 }
 
 func (l *Loader) LoadTransformer(
-	ldr ifc.Loader, v ifc.Validator, res *resource.Resource) (resmap.Transformer, error) {
+	ldr ifc.Loader, v ifc.Validator, res *resource.Resource) (*resmap.TransformerWithProperties, error) {
 	c, err := l.loadAndConfigurePlugin(ldr, v, res)
 	if err != nil {
 		return nil, err
@@ -101,7 +109,7 @@ func (l *Loader) LoadTransformer(
 	if !ok {
 		return nil, fmt.Errorf("plugin %s not a transformer", res.OrgId())
 	}
-	return t, nil
+	return &resmap.TransformerWithProperties{Transformer: t}, nil
 }
 
 func relativePluginPath(id resid.ResId) string {

api/internal/target/kusttarget.go

@@ -14,11 +14,13 @@ import (
 	"sigs.k8s.io/kustomize/api/ifc"
 	"sigs.k8s.io/kustomize/api/internal/accumulator"
 	"sigs.k8s.io/kustomize/api/internal/builtins"
+	"sigs.k8s.io/kustomize/api/internal/kusterr"
 	"sigs.k8s.io/kustomize/api/internal/plugins/builtinconfig"
 	"sigs.k8s.io/kustomize/api/internal/plugins/builtinhelpers"
 	"sigs.k8s.io/kustomize/api/internal/plugins/loader"
 	"sigs.k8s.io/kustomize/api/internal/utils"
 	"sigs.k8s.io/kustomize/api/konfig"
+	load "sigs.k8s.io/kustomize/api/loader"
 	"sigs.k8s.io/kustomize/api/resmap"
 	"sigs.k8s.io/kustomize/api/resource"
 	"sigs.k8s.io/kustomize/api/types"
@@ -29,10 +31,12 @@ import (
 // KustTarget encapsulates the entirety of a kustomization build.
 type KustTarget struct {
 	kustomization *types.Kustomization
+	kustFileName  string
 	ldr           ifc.Loader
 	validator     ifc.Validator
 	rFactory      *resmap.Factory
 	pLdr          *loader.Loader
+	origin        *resource.Origin
 }
 
 // NewKustTarget returns a new instance of KustTarget.
@@ -53,7 +57,7 @@ func NewKustTarget(
 
 // Load attempts to load the target's kustomization file.
 func (kt *KustTarget) Load() error {
-	content, err := loadKustFile(kt.ldr)
+	content, kustFileName, err := loadKustFile(kt.ldr)
 	if err != nil {
 		return err
 	}
@@ -74,6 +78,7 @@ func (kt *KustTarget) Load() error {
 				strings.Join(errs, "\n"), kt.ldr.Root())
 	}
 	kt.kustomization = &k
+	kt.kustFileName = kustFileName
 	return nil
 }
 
@@ -85,23 +90,25 @@ func (kt *KustTarget) Kustomization() types.Kustomization {
 	return result
 }
 
-func loadKustFile(ldr ifc.Loader) ([]byte, error) {
+func loadKustFile(ldr ifc.Loader) ([]byte, string, error) {
 	var content []byte
 	match := 0
+	var kustFileName string
 	for _, kf := range konfig.RecognizedKustomizationFileNames() {
 		c, err := ldr.Load(kf)
 		if err == nil {
 			match += 1
 			content = c
+			kustFileName = kf
 		}
 	}
 	switch match {
 	case 0:
-		return nil, NewErrMissingKustomization(ldr.Root())
+		return nil, "", NewErrMissingKustomization(ldr.Root())
 	case 1:
-		return content, nil
+		return content, kustFileName, nil
 	default:
-		return nil, fmt.Errorf(
+		return nil, "", fmt.Errorf(
 			"Found multiple kustomization files under: %s\n", ldr.Root())
 	}
 }
@@ -114,10 +121,11 @@ func (kt *KustTarget) MakeCustomizedResMap() (resmap.ResMap, error) {
 
 func (kt *KustTarget) makeCustomizedResMap() (resmap.ResMap, error) {
 	var origin *resource.Origin
-	if utils.StringSliceContains(kt.kustomization.BuildMetadata, types.OriginAnnotations) {
+	if len(kt.kustomization.BuildMetadata) != 0 {
 		origin = &resource.Origin{}
 	}
-	ra, err := kt.AccumulateTarget(origin)
+	kt.origin = origin
+	ra, err := kt.AccumulateTarget()
 	if err != nil {
 		return nil, err
 	}
@@ -169,20 +177,20 @@ func (kt *KustTarget) addHashesToNames(
 // through kustomization directories, it updates `origin.path`
 // accordingly. When a remote base is found, it updates `origin.repo`
 // and `origin.ref` accordingly.
-func (kt *KustTarget) AccumulateTarget(origin *resource.Origin) (
+func (kt *KustTarget) AccumulateTarget() (
 	ra *accumulator.ResAccumulator, err error) {
-	return kt.accumulateTarget(accumulator.MakeEmptyAccumulator(), origin)
+	return kt.accumulateTarget(accumulator.MakeEmptyAccumulator())
 }
 
 // ra should be empty when this KustTarget is a Kustomization, or the ra of the parent if this KustTarget is a Component
 // (or empty if the Component does not have a parent).
-func (kt *KustTarget) accumulateTarget(ra *accumulator.ResAccumulator, origin *resource.Origin) (
+func (kt *KustTarget) accumulateTarget(ra *accumulator.ResAccumulator) (
 	resRa *accumulator.ResAccumulator, err error) {
-	ra, err = kt.accumulateResources(ra, kt.kustomization.Resources, origin)
+	ra, err = kt.accumulateResources(ra, kt.kustomization.Resources)
 	if err != nil {
 		return nil, errors.Wrap(err, "accumulating resources")
 	}
-	ra, err = kt.accumulateComponents(ra, kt.kustomization.Components, origin)
+	ra, err = kt.accumulateComponents(ra, kt.kustomization.Components)
 	if err != nil {
 		return nil, errors.Wrap(err, "accumulating components")
 	}
@@ -245,22 +253,29 @@ func (kt *KustTarget) IgnoreLocal(ra *accumulator.ResAccumulator) error {
 
 func (kt *KustTarget) runGenerators(
 	ra *accumulator.ResAccumulator) error {
-	var generators []resmap.Generator
+	var generators []*resmap.GeneratorWithProperties
 	gs, err := kt.configureBuiltinGenerators()
 	if err != nil {
 		return err
 	}
 	generators = append(generators, gs...)
+
 	gs, err = kt.configureExternalGenerators()
 	if err != nil {
 		return errors.Wrap(err, "loading generator plugins")
 	}
 	generators = append(generators, gs...)
-	for _, g := range generators {
+	for i, g := range generators {
 		resMap, err := g.Generate()
 		if err != nil {
 			return err
 		}
+		if resMap != nil {
+			err = resMap.AddOriginAnnotation(generators[i].Origin)
+			if err != nil {
+				return errors.Wrapf(err, "adding origin annotations for generator %v", g)
+			}
+		}
 		err = ra.AbsorbAll(resMap)
 		if err != nil {
 			return errors.Wrapf(err, "merging from generator %v", g)
@@ -269,7 +284,8 @@ func (kt *KustTarget) runGenerators(
 	return nil
 }
 
-func (kt *KustTarget) configureExternalGenerators() ([]resmap.Generator, error) {
+func (kt *KustTarget) configureExternalGenerators() (
+	[]*resmap.GeneratorWithProperties, error) {
 	ra := accumulator.MakeEmptyAccumulator()
 	var generatorPaths []string
 	for _, p := range kt.kustomization.Generators {
@@ -280,9 +296,17 @@ func (kt *KustTarget) configureExternalGenerators() ([]resmap.Generator, error)
 			generatorPaths = append(generatorPaths, p)
 			continue
 		}
+		// inline config, track the origin
+		if kt.origin != nil {
+			resources := rm.Resources()
+			for _, r := range resources {
+				r.SetOrigin(kt.origin.Append(kt.kustFileName))
+				rm.Replace(r)
+			}
+		}
 		ra.AppendAll(rm)
 	}
-	ra, err := kt.accumulateResources(ra, generatorPaths, &resource.Origin{})
+	ra, err := kt.accumulateResources(ra, generatorPaths)
 	if err != nil {
 		return nil, err
 	}
@@ -290,7 +314,7 @@ func (kt *KustTarget) configureExternalGenerators() ([]resmap.Generator, error)
 }
 
 func (kt *KustTarget) runTransformers(ra *accumulator.ResAccumulator) error {
-	var r []resmap.Transformer
+	var r []*resmap.TransformerWithProperties
 	tConfig := ra.GetTransformerConfig()
 	lts, err := kt.configureBuiltinTransformers(tConfig)
 	if err != nil {
@@ -305,7 +329,7 @@ func (kt *KustTarget) runTransformers(ra *accumulator.ResAccumulator) error {
 	return ra.Transform(newMultiTransformer(r))
 }
 
-func (kt *KustTarget) configureExternalTransformers(transformers []string) ([]resmap.Transformer, error) {
+func (kt *KustTarget) configureExternalTransformers(transformers []string) ([]*resmap.TransformerWithProperties, error) {
 	ra := accumulator.MakeEmptyAccumulator()
 	var transformerPaths []string
 	for _, p := range transformers {
@@ -316,9 +340,17 @@ func (kt *KustTarget) configureExternalTransformers(transformers []string) ([]re
 			transformerPaths = append(transformerPaths, p)
 			continue
 		}
+		// inline config, track the origin
+		if kt.origin != nil {
+			resources := rm.Resources()
+			for _, r := range resources {
+				r.SetOrigin(kt.origin.Append(kt.kustFileName))
+				rm.Replace(r)
+			}
+		}
 		ra.AppendAll(rm)
 	}
-	ra, err := kt.accumulateResources(ra, transformerPaths, &resource.Origin{})
+	ra, err := kt.accumulateResources(ra, transformerPaths)
 	if err != nil {
 		return nil, err
 	}
@@ -366,19 +398,31 @@ func (kt *KustTarget) removeValidatedByLabel(rm resmap.ResMap) error {
 // accumulateResources fills the given resourceAccumulator
 // with resources read from the given list of paths.
 func (kt *KustTarget) accumulateResources(
-	ra *accumulator.ResAccumulator, paths []string, origin *resource.Origin) (*accumulator.ResAccumulator, error) {
+	ra *accumulator.ResAccumulator, paths []string) (*accumulator.ResAccumulator, error) {
 	for _, path := range paths {
 		// try loading resource as file then as base (directory or git repository)
-		if errF := kt.accumulateFile(ra, path, origin); errF != nil {
+		if errF := kt.accumulateFile(ra, path); errF != nil {
+			// not much we can do if the error is an HTTP error so we bail out
+			if errors.Is(errF, load.ErrorHTTP) {
+				return nil, errF
+			}
+			if kusterr.IsMalformedYAMLError(errF) { // Some error occurred while tyring to decode YAML file
+				return nil, errF
+			}
 			ldr, err := kt.ldr.New(path)
 			if err != nil {
 				return nil, errors.Wrapf(
 					err, "accumulation err='%s'", errF.Error())
 			}
-			if origin != nil {
-				ra, err = kt.accumulateDirectory(ra, ldr, origin.Append(path), false)
+			// store the origin, we'll need it later
+			origin := kt.origin.Copy()
+			if kt.origin != nil {
+				kt.origin = kt.origin.Append(path)
+				ra, err = kt.accumulateDirectory(ra, ldr, false)
+				// after we are done recursing through the directory, reset the origin
+				kt.origin = &origin
 			} else {
-				ra, err = kt.accumulateDirectory(ra, ldr, nil, false)
+				ra, err = kt.accumulateDirectory(ra, ldr, false)
 			}
 			if err != nil {
 				return nil, errors.Wrapf(
@@ -392,7 +436,7 @@ func (kt *KustTarget) accumulateResources(
 // accumulateResources fills the given resourceAccumulator
 // with resources read from the given list of paths.
 func (kt *KustTarget) accumulateComponents(
-	ra *accumulator.ResAccumulator, paths []string, origin *resource.Origin) (*accumulator.ResAccumulator, error) {
+	ra *accumulator.ResAccumulator, paths []string) (*accumulator.ResAccumulator, error) {
 	for _, path := range paths {
 		// Components always refer to directories
 		ldr, errL := kt.ldr.New(path)
@@ -400,10 +444,15 @@ func (kt *KustTarget) accumulateComponents(
 			return nil, fmt.Errorf("loader.New %q", errL)
 		}
 		var errD error
-		if origin != nil {
-			ra, errD = kt.accumulateDirectory(ra, ldr, origin.Append(path), true)
+		// store the origin, we'll need it later
+		origin := kt.origin.Copy()
+		if kt.origin != nil {
+			kt.origin = kt.origin.Append(path)
+			ra, errD = kt.accumulateDirectory(ra, ldr, true)
+			// after we are done recursing through the directory, reset the origin
+			kt.origin = &origin
 		} else {
-			ra, errD = kt.accumulateDirectory(ra, ldr, nil, true)
+			ra, errD = kt.accumulateDirectory(ra, ldr, true)
 		}
 		if errD != nil {
 			return nil, fmt.Errorf("accumulateDirectory: %q", errD)
@@ -413,7 +462,7 @@ func (kt *KustTarget) accumulateComponents(
 }
 
 func (kt *KustTarget) accumulateDirectory(
-	ra *accumulator.ResAccumulator, ldr ifc.Loader, origin *resource.Origin, isComponent bool) (*accumulator.ResAccumulator, error) {
+	ra *accumulator.ResAccumulator, ldr ifc.Loader, isComponent bool) (*accumulator.ResAccumulator, error) {
 	defer ldr.Cleanup()
 	subKt := NewKustTarget(ldr, kt.validator, kt.rFactory, kt.pLdr)
 	err := subKt.Load()
@@ -422,6 +471,7 @@ func (kt *KustTarget) accumulateDirectory(
 			err, "couldn't make target for path '%s'", ldr.Root())
 	}
 	subKt.kustomization.BuildMetadata = kt.kustomization.BuildMetadata
+	subKt.origin = kt.origin
 	var bytes []byte
 	path := ldr.Root()
 	if openApiPath, exists := subKt.Kustomization().OpenAPI["path"]; exists {
@@ -445,12 +495,12 @@ func (kt *KustTarget) accumulateDirectory(
 	var subRa *accumulator.ResAccumulator
 	if isComponent {
 		// Components don't create a new accumulator: the kustomization directives are added to the current accumulator
-		subRa, err = subKt.accumulateTarget(ra, origin)
+		subRa, err = subKt.accumulateTarget(ra)
 		ra = accumulator.MakeEmptyAccumulator()
 	} else {
 		// Child Kustomizations create a new accumulator which resolves their kustomization directives, which will later
 		// be merged into the current accumulator.
-		subRa, err = subKt.AccumulateTarget(origin)
+		subRa, err = subKt.AccumulateTarget()
 	}
 	if err != nil {
 		return nil, errors.Wrapf(
@@ -465,17 +515,17 @@ func (kt *KustTarget) accumulateDirectory(
 }
 
 func (kt *KustTarget) accumulateFile(
-	ra *accumulator.ResAccumulator, path string, origin *resource.Origin) error {
+	ra *accumulator.ResAccumulator, path string) error {
 	resources, err := kt.rFactory.FromFile(kt.ldr, path)
 	if err != nil {
 		return errors.Wrapf(err, "accumulating resources from '%s'", path)
 	}
-	if origin != nil {
-		originAnno, err := origin.Append(path).String()
+	if kt.origin != nil {
+		originAnno, err := kt.origin.Append(path).String()
 		if err != nil {
 			return errors.Wrapf(err, "cannot add path annotation for '%s'", path)
 		}
-		err = resources.AnnotateAll(utils.OriginAnnotation, originAnno)
+		err = resources.AnnotateAll(utils.OriginAnnotationKey, originAnno)
 		if err != nil || originAnno == "" {
 			return errors.Wrapf(err, "cannot add path annotation for '%s'", path)
 		}

api/internal/target/kusttarget_configplugin.go

@@ -5,11 +5,14 @@ package target
 
 import (
 	"fmt"
+	"path/filepath"
 
 	"sigs.k8s.io/kustomize/api/internal/plugins/builtinconfig"
 	"sigs.k8s.io/kustomize/api/internal/plugins/builtinhelpers"
 	"sigs.k8s.io/kustomize/api/resmap"
+	"sigs.k8s.io/kustomize/api/resource"
 	"sigs.k8s.io/kustomize/api/types"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 // Functions dedicated to configuring the builtin
@@ -28,7 +31,7 @@ import (
 // N plugin instances with differing configurations.
 
 func (kt *KustTarget) configureBuiltinGenerators() (
-	result []resmap.Generator, err error) {
+	result []*resmap.GeneratorWithProperties, err error) {
 	for _, bpt := range []builtinhelpers.BuiltinPluginType{
 		builtinhelpers.ConfigMapGenerator,
 		builtinhelpers.SecretGenerator,
@@ -39,14 +42,32 @@ func (kt *KustTarget) configureBuiltinGenerators() (
 		if err != nil {
 			return nil, err
 		}
-		result = append(result, r...)
+
+		var generatorOrigin *resource.Origin
+		if kt.origin != nil {
+			generatorOrigin = &resource.Origin{
+				Repo:         kt.origin.Repo,
+				Ref:          kt.origin.Ref,
+				ConfiguredIn: filepath.Join(kt.origin.Path, kt.kustFileName),
+				ConfiguredBy: yaml.ResourceIdentifier{
+					TypeMeta: yaml.TypeMeta{
+						APIVersion: "builtin",
+						Kind:       bpt.String(),
+					},
+				},
+			}
+		}
+
+		for i := range r {
+			result = append(result, &resmap.GeneratorWithProperties{Generator: r[i], Origin: generatorOrigin})
+		}
 	}
 	return result, nil
 }
 
 func (kt *KustTarget) configureBuiltinTransformers(
 	tc *builtinconfig.TransformerConfig) (
-	result []resmap.Transformer, err error) {
+	result []*resmap.TransformerWithProperties, err error) {
 	for _, bpt := range []builtinhelpers.BuiltinPluginType{
 		builtinhelpers.PatchStrategicMergeTransformer,
 		builtinhelpers.PatchTransformer,
@@ -65,7 +86,23 @@ func (kt *KustTarget) configureBuiltinTransformers(
 		if err != nil {
 			return nil, err
 		}
-		result = append(result, r...)
+		var transformerOrigin *resource.Origin
+		if kt.origin != nil {
+			transformerOrigin = &resource.Origin{
+				Repo:         kt.origin.Repo,
+				Ref:          kt.origin.Ref,
+				ConfiguredIn: filepath.Join(kt.origin.Path, kt.kustFileName),
+				ConfiguredBy: yaml.ResourceIdentifier{
+					TypeMeta: yaml.TypeMeta{
+						APIVersion: "builtin",
+						Kind:       bpt.String(),
+					},
+				},
+			}
+		}
+		for i := range r {
+			result = append(result, &resmap.TransformerWithProperties{Transformer: r[i], Origin: transformerOrigin})
+		}
 	}
 	return result, nil
 }
@@ -148,6 +185,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.NamespaceTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, tc *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if kt.kustomization.Namespace == "" {
+			return
+		}
 		var c struct {
 			types.ObjectMeta `json:"metadata,omitempty" yaml:"metadata,omitempty"`
 			FieldSpecs       []types.FieldSpec
@@ -231,6 +271,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.LabelTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, tc *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if len(kt.kustomization.Labels) == 0 && len(kt.kustomization.CommonLabels) == 0 {
+			return
+		}
 		for _, label := range kt.kustomization.Labels {
 			var c struct {
 				Labels     map[string]string
@@ -273,6 +316,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.AnnotationsTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, tc *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if len(kt.kustomization.CommonAnnotations) == 0 {
+			return
+		}
 		var c struct {
 			Annotations map[string]string
 			FieldSpecs  []types.FieldSpec
@@ -290,6 +336,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.PrefixTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, tc *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if kt.kustomization.NamePrefix == "" {
+			return
+		}
 		var c struct {
 			Prefix     string            `json:"prefix,omitempty" yaml:"prefix,omitempty"`
 			FieldSpecs []types.FieldSpec `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
@@ -307,6 +356,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.SuffixTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, tc *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if kt.kustomization.NameSuffix == "" {
+			return
+		}
 		var c struct {
 			Suffix     string            `json:"suffix,omitempty" yaml:"suffix,omitempty"`
 			FieldSpecs []types.FieldSpec `json:"fieldSpecs,omitempty" yaml:"fieldSpecs,omitempty"`
@@ -343,6 +395,9 @@ var transformerConfigurators = map[builtinhelpers.BuiltinPluginType]func(
 	builtinhelpers.ReplacementTransformer: func(
 		kt *KustTarget, bpt builtinhelpers.BuiltinPluginType, f tFactory, _ *builtinconfig.TransformerConfig) (
 		result []resmap.Transformer, err error) {
+		if len(kt.kustomization.Replacements) == 0 {
+			return
+		}
 		var c struct {
 			Replacements []types.ReplacementField
 		}

api/internal/target/multitransformer.go

@@ -9,15 +9,15 @@ import (
 
 // multiTransformer contains a list of transformers.
 type multiTransformer struct {
-	transformers []resmap.Transformer
+	transformers []*resmap.TransformerWithProperties
 }
 
 var _ resmap.Transformer = &multiTransformer{}
 
 // newMultiTransformer constructs a multiTransformer.
-func newMultiTransformer(t []resmap.Transformer) resmap.Transformer {
+func newMultiTransformer(t []*resmap.TransformerWithProperties) resmap.Transformer {
 	r := &multiTransformer{
-		transformers: make([]resmap.Transformer, len(t)),
+		transformers: make([]*resmap.TransformerWithProperties, len(t)),
 	}
 	copy(r.transformers, t)
 	return r
@@ -30,6 +30,11 @@ func (o *multiTransformer) Transform(m resmap.ResMap) error {
 		if err := t.Transform(m); err != nil {
 			return err
 		}
+		if t.Origin != nil {
+			if err := m.AddTransformerAnnotation(t.Origin); err != nil {
+				return err
+			}
+		}
 		m.DropEmpties()
 	}
 	return nil

api/internal/target/vars_test.go

@@ -8,7 +8,6 @@ import (
 	"strings"
 	"testing"
 
-	"sigs.k8s.io/kustomize/api/resource"
 	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
 	"sigs.k8s.io/kustomize/api/types"
 	"sigs.k8s.io/kustomize/kyaml/resid"
@@ -66,7 +65,7 @@ vars:
       apiVersion: v300
 `)
 	ra, err := makeAndLoadKustTarget(
-		t, th.GetFSys(), "/app").AccumulateTarget(&resource.Origin{})
+		t, th.GetFSys(), "/app").AccumulateTarget()
 	if err != nil {
 		t.Fatalf("Err: %v", err)
 	}
@@ -121,7 +120,7 @@ resources:
 `)
 
 	ra, err := makeAndLoadKustTarget(
-		t, th.GetFSys(), "/app/overlays/o2").AccumulateTarget(&resource.Origin{})
+		t, th.GetFSys(), "/app/overlays/o2").AccumulateTarget()
 	if err != nil {
 		t.Fatalf("Err: %v", err)
 	}
@@ -178,7 +177,7 @@ resources:
 - ../o1
 `)
 	_, err := makeAndLoadKustTarget(
-		t, th.GetFSys(), "/app/overlays/o2").AccumulateTarget(&resource.Origin{})
+		t, th.GetFSys(), "/app/overlays/o2").AccumulateTarget()
 	if err == nil {
 		t.Fatalf("expected var collision")
 	}

api/internal/utils/annotations.go

@@ -3,6 +3,7 @@ package utils
 import "sigs.k8s.io/kustomize/api/konfig"
 
 const (
+	// build annotations
 	BuildAnnotationPreviousKinds      = konfig.ConfigAnnoDomain + "/previousKinds"
 	BuildAnnotationPreviousNames      = konfig.ConfigAnnoDomain + "/previousNames"
 	BuildAnnotationPrefixes           = konfig.ConfigAnnoDomain + "/prefixes"
@@ -17,7 +18,9 @@ const (
 	BuildAnnotationAllowNameChange = konfig.ConfigAnnoDomain + "/allowNameChange"
 	BuildAnnotationAllowKindChange = konfig.ConfigAnnoDomain + "/allowKindChange"
 
-	OriginAnnotation = "config.kubernetes.io/origin"
+	// for keeping track of origin and transformer data
+	OriginAnnotationKey      = "config.kubernetes.io/origin"
+	TransformerAnnotationKey = "alpha.config.kubernetes.io/transformations"
 
 	Enabled = "enabled"
 )

api/konfig/builtinpluginconsts/namereference.go

@@ -50,6 +50,16 @@ nameReference:
     kind: Pod
   - path: template/spec/volumes/configMap/name
     kind: PodTemplate
+  - path: template/spec/containers/env/valueFrom/configMapKeyRef/name
+    kind: PodTemplate
+  - path: template/spec/initContainers/env/valueFrom/configMapKeyRef/name
+    kind: PodTemplate
+  - path: template/spec/containers/envFrom/configMapRef/name
+    kind: PodTemplate
+  - path: template/spec/initContainers/envFrom/configMapRef/name
+    kind: PodTemplate
+  - path: template/spec/volumes/projected/sources/configMap/name
+    kind: PodTemplate
   - path: spec/template/spec/volumes/configMap/name
     kind: Deployment
   - path: spec/template/spec/containers/env/valueFrom/configMapKeyRef/name
@@ -155,6 +165,20 @@ nameReference:
   - path: spec/volumes/projected/sources/secret/name
     version: v1
     kind: Pod
+  - path: template/spec/volumes/secret/secretName
+    kind: PodTemplate
+  - path: template/spec/containers/env/valueFrom/secretKeyRef/name
+    kind: PodTemplate
+  - path: template/spec/initContainers/env/valueFrom/secretKeyRef/name
+    kind: PodTemplate
+  - path: template/spec/containers/envFrom/secretRef/name
+    kind: PodTemplate
+  - path: template/spec/initContainers/envFrom/secretRef/name
+    kind: PodTemplate
+  - path: template/spec/imagePullSecrets/name
+    kind: PodTemplate
+  - path: template/spec/volumes/projected/sources/secret/name
+    kind: PodTemplate
   - path: spec/template/spec/volumes/secret/secretName
     kind: Deployment
   - path: spec/template/spec/containers/env/valueFrom/secretKeyRef/name

api/krusty/baseandoverlaymedium_test.go

@@ -292,10 +292,8 @@ metadata:
 ---
 apiVersion: v1
 data:
-  nonsense: |
-    Lorem ipsum dolor sit amet, consectetur
-    adipiscing elit, sed do eiusmod tempor
-    incididunt ut labore et dolore magna aliqua.
+  nonsense: "Lorem ipsum dolor sit amet, consectetur\nadipiscing elit, sed do eiusmod
+    tempor\nincididunt ut labore et dolore magna aliqua. \n"
 kind: ConfigMap
 metadata:
   annotations:
@@ -304,6 +302,6 @@ metadata:
     app: mungebot
     org: kubernetes
     repo: test-infra
-  name: test-infra-app-config-4thktg822m
+  name: test-infra-app-config-49d6f5h7b5
 `)
 }

api/krusty/basic_io_test.go

@@ -6,6 +6,7 @@ package krusty_test
 import (
 	"testing"
 
+	"sigs.k8s.io/kustomize/api/internal/kusterr"
 	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
 )
 
@@ -80,3 +81,35 @@ spec:
   clusterIP: None
 `)
 }
+
+//test for https://github.com/kubernetes-sigs/kustomize/issues/3812#issuecomment-862339267
+func TestBasicIO3812(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteK(".", `
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+  - service.yaml
+`)
+
+	th.WriteF("service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: kapacitor
+  labels:
+    app.kubernetes.io/name: tick-kapacitor
+spec:
+  selector:
+    app.kubernetes.io/name: tick-kapacitor
+    - name: http
+      port: 9092
+      protocol: TCP
+  type: ClusterIP
+`)
+
+	err := th.RunWithErr(".", th.MakeDefaultOptions())
+	if !kusterr.IsMalformedYAMLError(err) {
+		t.Fatalf("unexpected error: %q", err)
+	}
+}

api/krusty/blankvalues_test.go

@@ -0,0 +1,49 @@
+package krusty_test
+
+import (
+	"strings"
+	"testing"
+
+	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
+)
+
+// test for https://github.com/kubernetes-sigs/kustomize/issues/4240
+func TestBlankNamespace4240(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteK(".", `
+resources:
+- resource.yaml
+`)
+
+	th.WriteF("resource.yaml", `
+---
+apiVersion: v1
+kind: ServiceAccount
+metadata:
+  name: test
+---
+apiVersion: rbac.authorization.k8s.io/v1
+kind: Role
+metadata:
+  name: test
+rules: []
+---
+apiVersion: rbac.authorization.k8s.io/v1
+kind: RoleBinding
+metadata:
+  name: test
+subjects:
+- kind: ServiceAccount
+  name: test
+  namespace:
+roleRef:
+  kind: Role
+  name: test
+  apiGroup: rbac.authorization.k8s.io	
+`)
+
+	err := th.RunWithErr(".", th.MakeDefaultOptions())
+	if !strings.Contains(err.Error(), "Invalid Input: namespace is blank for resource") {
+		t.Fatalf("unexpected error: %q", err)
+	}
+}

api/krusty/buildmetadata_test.go

@@ -1,265 +0,0 @@
-// Copyright 2019 The Kubernetes Authors.
-// SPDX-License-Identifier: Apache-2.0
-
-package krusty_test
-
-import (
-	"testing"
-
-	_ "sigs.k8s.io/kustomize/api/krusty"
-	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
-)
-
-func TestAnnoOriginLocalFiles(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteF("service.yaml", `
-apiVersion: v1
-kind: Service
-metadata:
-  name: myService
-spec:
-  ports:
-  - port: 7002
-`)
-	th.WriteK(".", `
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-resources:
-- service.yaml
-buildMetadata: [originAnnotations]
-`)
-	options := th.MakeDefaultOptions()
-	m := th.Run(".", options)
-	th.AssertActualEqualsExpected(m, `
-apiVersion: v1
-kind: Service
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: service.yaml
-  name: myService
-spec:
-  ports:
-  - port: 7002
-`)
-}
-
-func TestAnnoOriginLocalFilesWithOverlay(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteK("base", `
-namePrefix: b-
-resources:
-- namespace.yaml
-- role.yaml
-- service.yaml
-- deployment.yaml
-`)
-	th.WriteF("base/service.yaml", `
-apiVersion: v1
-kind: Service
-metadata:
-  name: myService
-`)
-	th.WriteF("base/namespace.yaml", `
-apiVersion: v1
-kind: Namespace
-metadata:
-  name: myNs
-`)
-	th.WriteF("base/role.yaml", `
-apiVersion: v1
-kind: Role
-metadata:
-  name: myRole
-`)
-	th.WriteF("base/deployment.yaml", `
-apiVersion: v1
-kind: Deployment
-metadata:
-  name: myDep
-`)
-	th.WriteK("prod", `
-namePrefix: p-
-resources:
-- ../base
-- service.yaml
-- namespace.yaml
-buildMetadata: [originAnnotations]
-`)
-	th.WriteF("prod/service.yaml", `
-apiVersion: v1
-kind: Service
-metadata:
-  name: myService2
-`)
-	th.WriteF("prod/namespace.yaml", `
-apiVersion: v1
-kind: Namespace
-metadata:
-  name: myNs2
-`)
-	m := th.Run("prod", th.MakeDefaultOptions())
-	th.AssertActualEqualsExpected(m, `
-apiVersion: v1
-kind: Namespace
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: ../base/namespace.yaml
-  name: myNs
----
-apiVersion: v1
-kind: Role
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: ../base/role.yaml
-  name: p-b-myRole
----
-apiVersion: v1
-kind: Service
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: ../base/service.yaml
-  name: p-b-myService
----
-apiVersion: v1
-kind: Deployment
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: ../base/deployment.yaml
-  name: p-b-myDep
----
-apiVersion: v1
-kind: Service
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: service.yaml
-  name: p-myService2
----
-apiVersion: v1
-kind: Namespace
-metadata:
-  annotations:
-    config.kubernetes.io/origin: |
-      path: namespace.yaml
-  name: myNs2
-`)
-}
-
-// This is a copy of TestGeneratorBasics in configmaps_test.go,
-// except that we've enabled the addAnnoOrigin option
-// (which doesn't do anything yet).
-// TODO: Generated resources should receive the annotation
-//      config.kubernetes.io/origin: |
-//        generated-by: path/to/kustomization.yaml
-func TestGeneratorWithAnnoOrigin(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteK(".", `
-namePrefix: blah-
-configMapGenerator:
-- name: bob
-  literals:
-  - fruit=apple
-  - vegetable=broccoli
-  envs:
-  - foo.env
-  env: bar.env
-  files:
-  - passphrase=phrase.dat
-  - forces.txt
-- name: json
-  literals:
-  - 'v2=[{"path": "var/druid/segment-cache"}]'
-  - >- 
-    druid_segmentCache_locations=[{"path": 
-    "var/druid/segment-cache", 
-    "maxSize": 32000000000, 
-    "freeSpacePercent": 1.0}]
-secretGenerator:
-- name: bob
-  literals:
-  - fruit=apple
-  - vegetable=broccoli
-  envs:
-  - foo.env
-  files:
-  - passphrase=phrase.dat
-  - forces.txt
-  env: bar.env
-`)
-	th.WriteF("foo.env", `
-MOUNTAIN=everest
-OCEAN=pacific
-`)
-	th.WriteF("bar.env", `
-BIRD=falcon
-`)
-	th.WriteF("phrase.dat", `
-Life is short.
-But the years are long.
-Not while the evil days come not.
-`)
-	th.WriteF("forces.txt", `
-gravitational
-electromagnetic
-strong nuclear
-weak nuclear
-`)
-	opts := th.MakeDefaultOptions()
-	m := th.Run(".", opts)
-	th.AssertActualEqualsExpected(
-		m, `
-apiVersion: v1
-data:
-  BIRD: falcon
-  MOUNTAIN: everest
-  OCEAN: pacific
-  forces.txt: |2
-
-    gravitational
-    electromagnetic
-    strong nuclear
-    weak nuclear
-  fruit: apple
-  passphrase: |2
-
-    Life is short.
-    But the years are long.
-    Not while the evil days come not.
-  vegetable: broccoli
-kind: ConfigMap
-metadata:
-  name: blah-bob-g9df72cd5b
----
-apiVersion: v1
-data:
-  druid_segmentCache_locations: '[{"path":  "var/druid/segment-cache",  "maxSize":
-    32000000000,  "freeSpacePercent": 1.0}]'
-  v2: '[{"path": "var/druid/segment-cache"}]'
-kind: ConfigMap
-metadata:
-  name: blah-json-5298bc8g99
----
-apiVersion: v1
-data:
-  BIRD: ZmFsY29u
-  MOUNTAIN: ZXZlcmVzdA==
-  OCEAN: cGFjaWZpYw==
-  forces.txt: |
-    CmdyYXZpdGF0aW9uYWwKZWxlY3Ryb21hZ25ldGljCnN0cm9uZyBudWNsZWFyCndlYWsgbn
-    VjbGVhcgo=
-  fruit: YXBwbGU=
-  passphrase: |
-    CkxpZmUgaXMgc2hvcnQuCkJ1dCB0aGUgeWVhcnMgYXJlIGxvbmcuCk5vdCB3aGlsZSB0aG
-    UgZXZpbCBkYXlzIGNvbWUgbm90Lgo=
-  vegetable: YnJvY2NvbGk=
-kind: Secret
-metadata:
-  name: blah-bob-58g62h555c
-type: Opaque
-`)
-}

api/krusty/component_test.go

@@ -551,7 +551,7 @@ components:
 `),
 			},
 			runPath:       "filesincomponents",
-			expectedError: "'/filesincomponents/stub.yaml' must be a directory to be a root",
+			expectedError: "'/filesincomponents/stub.yaml' must be a directory so that it can used as a build root",
 		},
 		"invalid-component-api-version": {
 			input: []FileGen{writeTestBase, writeOverlayProd,

api/krusty/configmaps_test.go

@@ -572,74 +572,3 @@ metadata:
   name: test-k9cc55dfm5
 `)
 }
-
-// regression test for https://github.com/kubernetes-sigs/kustomize/issues/4287
-func TestMultilineDataEndsWithSpace(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteK(".", `
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-configMapGenerator:
-  - name: config_bla
-    files:
-      - cfg.text=cfg.text
-`)
-	th.WriteF("cfg.text", `bla
-bla
-bla 
-`)
-
-	m := th.Run(".", th.MakeDefaultOptions())
-	th.AssertActualEqualsExpected(
-		m, `apiVersion: v1
-data:
-  cfg.text: |
-    bla
-    bla
-    bla
-kind: ConfigMap
-metadata:
-  name: config_bla-4k548khbf5
-`)
-}
-
-// regression test to record the behavior prior to the fix for https://github.com/kubernetes-sigs/kustomize/issues/4287
-// to ensure that the fix does not affect leading and trailing newlines in ConfigMap data
-func TestMultilineDataEndsLeadingAndTrailingNewlines(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteK(".", `
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-configMapGenerator:
-  - name: config_bla
-    files:
-      - cfg.text=cfg.text
-`)
-	th.WriteF("cfg.text", `
-
-bla
-bla
-bla
-
-
-
-`)
-
-	m := th.Run(".", th.MakeDefaultOptions())
-	th.AssertActualEqualsExpected(
-		m, `apiVersion: v1
-data:
-  cfg.text: |2+
-
-
-    bla
-    bla
-    bla
-
-
-
-kind: ConfigMap
-metadata:
-  name: config_bla-8dm6c68g22
-`)
-}

api/krusty/helmchartinflationgenerator_test.go

@@ -26,7 +26,6 @@ type: Opaque
 apiVersion: v1
 kind: Service
 metadata:
-  annotations: {}
   labels:
     app: test-minecraft
     chart: minecraft-3.1.3

api/krusty/kustomizer.go

@@ -10,6 +10,7 @@ import (
 	"sigs.k8s.io/kustomize/api/internal/builtins"
 	pLdr "sigs.k8s.io/kustomize/api/internal/plugins/loader"
 	"sigs.k8s.io/kustomize/api/internal/target"
+	"sigs.k8s.io/kustomize/api/internal/utils"
 	"sigs.k8s.io/kustomize/api/konfig"
 	fLdr "sigs.k8s.io/kustomize/api/loader"
 	"sigs.k8s.io/kustomize/api/provenance"
@@ -95,7 +96,7 @@ func (b *Kustomizer) Run(
 			return nil, err
 		}
 	}
-	if b.options.AddManagedbyLabel {
+	if b.options.AddManagedbyLabel || utils.StringSliceContains(kt.Kustomization().BuildMetadata, types.ManagedByLabelOption) {
 		t := builtins.LabelTransformerPlugin{
 			Labels: map[string]string{
 				konfig.ManagedbyLabelKey: fmt.Sprintf("kustomize-%s", provenance.GetProvenance().Semver()),
@@ -111,5 +112,11 @@ func (b *Kustomizer) Run(
 		}
 	}
 	m.RemoveBuildAnnotations()
+	if !utils.StringSliceContains(kt.Kustomization().BuildMetadata, types.OriginAnnotations) {
+		m.RemoveOriginAnnotations()
+	}
+	if !utils.StringSliceContains(kt.Kustomization().BuildMetadata, types.TransformerAnnotations) {
+		m.RemoveTransformerAnnotations()
+	}
 	return m, nil
 }

api/krusty/legacy_order_test.go

@@ -0,0 +1,62 @@
+package krusty_test
+
+import (
+	"testing"
+
+	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
+)
+
+func TestIssue4388(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteK(".", `
+resources:
+- resources.yaml
+`)
+	th.WriteF("resources.yaml", `
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: testing
+data:
+  key: value
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: testing-one
+data:
+  key: value
+---
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: testing-two
+data:
+  key: value
+`)
+	opts := th.MakeDefaultOptions()
+	opts.DoLegacyResourceSort = true
+	m := th.Run(".", opts)
+	th.AssertActualEqualsExpected(m, `
+apiVersion: v1
+data:
+  key: value
+kind: ConfigMap
+metadata:
+  name: testing
+---
+apiVersion: v1
+data:
+  key: value
+kind: ConfigMap
+metadata:
+  name: testing-one
+---
+apiVersion: v1
+data:
+  key: value
+kind: ConfigMap
+metadata:
+  name: testing-two
+`)
+}

api/krusty/managedbylabel_test.go

@@ -9,28 +9,7 @@ import (
 	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
 )
 
-func TestAddManagedbyLabel(t *testing.T) {
-	th := kusttest_test.MakeHarness(t)
-	th.WriteF("service.yaml", `
-apiVersion: v1
-kind: Service
-metadata:
-  name: myService
-spec:
-  ports:
-  - port: 7002
-`)
-	th.WriteK(".", `
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-resources:
-- service.yaml
-`)
-	options := th.MakeDefaultOptions()
-	options.AddManagedbyLabel = true
-	m := th.Run(".", options)
-	th.AssertActualEqualsExpected(m, `
-apiVersion: v1
+const expected = `apiVersion: v1
 kind: Service
 metadata:
   labels:
@@ -39,5 +18,51 @@ metadata:
 spec:
   ports:
   - port: 7002
+`
+
+func TestAddManagedbyLabel(t *testing.T) {
+	tests := []struct {
+		kustFile      string
+		managedByFlag bool
+		expected      string
+	}{
+		{
+			kustFile: `
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+- service.yaml
+`,
+			managedByFlag: true,
+			expected:      expected,
+		},
+		{
+			kustFile: `
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+- service.yaml
+buildMetadata: [managedByLabel]
+`,
+			managedByFlag: false,
+			expected:      expected,
+		},
+	}
+	for _, tc := range tests {
+		th := kusttest_test.MakeHarness(t)
+		th.WriteF("service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: myService
+spec:
+  ports:
+  - port: 7002
 `)
+		th.WriteK(".", tc.kustFile)
+		options := th.MakeDefaultOptions()
+		options.AddManagedbyLabel = tc.managedByFlag
+		m := th.Run(".", options)
+		th.AssertActualEqualsExpected(m, tc.expected)
+	}
 }

api/krusty/remoteload_test.go

@@ -4,12 +4,15 @@
 package krusty_test
 
 import (
+	"fmt"
+	"net/http"
 	"path/filepath"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/api/internal/utils"
 	"sigs.k8s.io/kustomize/api/krusty"
+	"sigs.k8s.io/kustomize/api/loader"
 	"sigs.k8s.io/kustomize/kyaml/filesys"
 )
 
@@ -74,6 +77,91 @@ spec:
 	assert.NoError(t, fSys.RemoveAll(tmpDir.String()))
 }
 
+func TestRemoteResourceGitHTTP(t *testing.T) {
+	output := `apiVersion: v1
+kind: Pod
+metadata:
+  labels:
+    app: myapp
+  name: dev-myapp-pod
+spec:
+  containers:
+  - image: nginx:1.7.9
+    name: nginx
+`
+	tests := []struct {
+		input []byte
+	}{
+		{
+			input: []byte(`
+resources:
+- https://github.com/kubernetes-sigs/kustomize/examples/multibases/dev/?ref=v1.0.6
+`),
+		},
+		{
+			input: []byte(`
+resources:
+- https://github.com/kubernetes-sigs/kustomize//examples/multibases/dev/?ref=v1.0.6
+`),
+		},
+		{
+			input: []byte(`
+resources:
+- git::https://github.com/kubernetes-sigs/kustomize/examples/multibases/dev/?ref=v1.0.6
+`),
+		},
+		{
+			input: []byte(`
+resources:
+- git::https://github.com/kubernetes-sigs/kustomize//examples/multibases/dev/?ref=v1.0.6
+`),
+		},
+	}
+
+	for _, test := range tests {
+		fSys := filesys.MakeFsOnDisk()
+		b := krusty.MakeKustomizer(krusty.MakeDefaultOptions())
+		tmpDir, err := filesys.NewTmpConfirmedDir()
+		assert.NoError(t, err)
+		assert.NoError(t, fSys.WriteFile(filepath.Join(tmpDir.String(), "kustomization.yaml"), test.input))
+		m, err := b.Run(fSys, tmpDir.String())
+		if utils.IsErrTimeout(err) {
+			// Don't fail on timeouts.
+			t.SkipNow()
+		}
+		assert.NoError(t, err)
+		yml, err := m.AsYaml()
+		assert.NoError(t, err)
+		assert.Equal(t, output, string(yml))
+		assert.NoError(t, fSys.RemoveAll(tmpDir.String()))
+	}
+}
+
+func TestRemoteResourceWithHTTPError(t *testing.T) {
+	fSys := filesys.MakeFsOnDisk()
+	b := krusty.MakeKustomizer(krusty.MakeDefaultOptions())
+	tmpDir, err := filesys.NewTmpConfirmedDir()
+	assert.NoError(t, err)
+
+	url404 := "https://github.com/thisisa404.yaml"
+	kusto := filepath.Join(tmpDir.String(), "kustomization.yaml")
+	assert.NoError(t, fSys.WriteFile(kusto, []byte(fmt.Sprintf(`
+resources:
+- %s
+`, url404))))
+
+	_, err = b.Run(fSys, tmpDir.String())
+	if utils.IsErrTimeout(err) {
+		// Don't fail on timeouts.
+		t.SkipNow()
+	}
+
+	httpErr := fmt.Errorf("%w: status code %d (%s)", loader.ErrorHTTP, 404, http.StatusText(404))
+	accuFromErr := fmt.Errorf("accumulating resources from '%s': %w", url404, httpErr)
+	expectedErr := fmt.Errorf("accumulating resources: %w", accuFromErr)
+	assert.EqualErrorf(t, err, expectedErr.Error(), url404)
+}
+
 func TestRemoteResourceAnnoOrigin(t *testing.T) {
 	fSys := filesys.MakeFsOnDisk()
 	b := krusty.MakeKustomizer(krusty.MakeDefaultOptions())

api/krusty/replacementtransformer_test.go

@@ -110,6 +110,67 @@ spec:
 	th.AssertActualEqualsExpected(m, expected)
 }
 
+func TestReplacementsFieldWithPathMultiple(t *testing.T) {
+	th := kusttest_test.MakeEnhancedHarness(t)
+	defer th.Reset()
+
+	th.WriteK(".", `
+resources:
+- resource.yaml
+
+replacements:
+- path: replacement.yaml
+`)
+	th.WriteF("replacement.yaml", `
+- source: 
+    kind: Deployment
+    fieldPath: spec.template.spec.containers.0.image
+  targets:
+  - select:
+      kind: Deployment
+    fieldPaths: 
+    - spec.template.spec.containers.1.image
+- source: 
+    kind: Deployment
+    fieldPath: spec.template.spec.containers.0.name
+  targets:
+  - select:
+      kind: Deployment
+    fieldPaths: 
+    - spec.template.spec.containers.1.name
+`)
+	th.WriteF("resource.yaml", `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: deploy
+spec:
+  template:
+    spec:
+      containers:
+      - image: foobar:1
+        name: replaced-with-digest
+      - image: postgres:1.8.0
+        name: postgresdb
+`)
+	expected := `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: deploy
+spec:
+  template:
+    spec:
+      containers:
+      - image: foobar:1
+        name: replaced-with-digest
+      - image: foobar:1
+        name: replaced-with-digest
+`
+	m := th.Run(".", th.MakeDefaultOptions())
+	th.AssertActualEqualsExpected(m, expected)
+}
+
 func TestReplacementTransformerWithDiamondShape(t *testing.T) {
 	th := kusttest_test.MakeEnhancedHarness(t)
 	defer th.Reset()

api/krusty/transformerannotation_test.go

@@ -0,0 +1,495 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package krusty_test
+
+import (
+	"os"
+	"path/filepath"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"sigs.k8s.io/kustomize/api/internal/utils"
+	"sigs.k8s.io/kustomize/api/krusty"
+	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
+	"sigs.k8s.io/kustomize/kyaml/filesys"
+)
+
+const generateDeploymentWithOriginDotSh = `#!/bin/sh
+
+cat <<EOF
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: nginx
+  labels:
+    app: nginx
+  annotations:
+    tshirt-size: small # this injects the resource reservations
+    config.kubernetes.io/origin: |
+      path: somefile.yaml
+spec:
+  selector:
+    matchLabels:
+      app: nginx
+  template:
+    metadata:
+      labels:
+        app: nginx
+    spec:
+      containers:
+      - name: nginx
+        image: nginx
+EOF
+`
+
+func TestAnnoTransformerBuiltinLocal(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteF("service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: myService
+spec:
+  ports:
+  - port: 7002
+`)
+	th.WriteK(".", `
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+- service.yaml
+buildMetadata: [transformerAnnotations]
+namePrefix: foo-
+`)
+	options := th.MakeDefaultOptions()
+	m := th.Run(".", options)
+	th.AssertActualEqualsExpected(m, `
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: foo-myService
+spec:
+  ports:
+  - port: 7002
+`)
+}
+
+func TestAnnoOriginAndTransformerBuiltinLocal(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteF("service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: myService
+spec:
+  ports:
+  - port: 7002
+`)
+	th.WriteK(".", `
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+resources:
+- service.yaml
+buildMetadata: [originAnnotations, transformerAnnotations]
+namePrefix: foo-
+`)
+	options := th.MakeDefaultOptions()
+	m := th.Run(".", options)
+	th.AssertActualEqualsExpected(m, `
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+    config.kubernetes.io/origin: |
+      path: service.yaml
+  name: foo-myService
+spec:
+  ports:
+  - port: 7002
+`)
+}
+
+func TestAnnoTransformerLocalFilesWithOverlay(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteK("base", `
+namePrefix: b-
+resources:
+- namespace.yaml
+- role.yaml
+- service.yaml
+- deployment.yaml
+`)
+	th.WriteF("base/service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: myService
+`)
+	th.WriteF("base/namespace.yaml", `
+apiVersion: v1
+kind: Namespace
+metadata:
+  name: myNs
+`)
+	th.WriteF("base/role.yaml", `
+apiVersion: v1
+kind: Role
+metadata:
+  name: myRole
+`)
+	th.WriteF("base/deployment.yaml", `
+apiVersion: v1
+kind: Deployment
+metadata:
+  name: myDep
+`)
+	th.WriteK("prod", `
+namePrefix: p-
+resources:
+- ../base
+- service.yaml
+- namespace.yaml
+buildMetadata: [transformerAnnotations]
+`)
+	th.WriteF("prod/service.yaml", `
+apiVersion: v1
+kind: Service
+metadata:
+  name: myService2
+`)
+	th.WriteF("prod/namespace.yaml", `
+apiVersion: v1
+kind: Namespace
+metadata:
+  name: myNs2
+`)
+	m := th.Run("prod", th.MakeDefaultOptions())
+	th.AssertActualEqualsExpected(m, `
+apiVersion: v1
+kind: Namespace
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: ../base/kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: myNs
+---
+apiVersion: v1
+kind: Role
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: ../base/kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: p-b-myRole
+---
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: ../base/kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: p-b-myService
+---
+apiVersion: v1
+kind: Deployment
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: ../base/kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: p-b-myDep
+---
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: p-myService2
+---
+apiVersion: v1
+kind: Namespace
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  name: myNs2
+`)
+}
+
+func TestAnnoOriginRemoteBuiltinTransformer(t *testing.T) {
+	fSys := filesys.MakeFsOnDisk()
+	b := krusty.MakeKustomizer(krusty.MakeDefaultOptions())
+	tmpDir, err := filesys.NewTmpConfirmedDir()
+	assert.NoError(t, err)
+	assert.NoError(t, fSys.WriteFile(filepath.Join(tmpDir.String(), "kustomization.yaml"), []byte(`
+resources:
+- github.com/kubernetes-sigs/kustomize/examples/multibases/production/?ref=v1.0.6
+buildMetadata: [transformerAnnotations]
+`)))
+	m, err := b.Run(
+		fSys,
+		tmpDir.String())
+	if utils.IsErrTimeout(err) {
+		// Don't fail on timeouts.
+		t.SkipNow()
+	}
+	if !assert.NoError(t, err) {
+		t.FailNow()
+	}
+	yml, err := m.AsYaml()
+	assert.NoError(t, err)
+	assert.Equal(t, `apiVersion: v1
+kind: Pod
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - repo: https://github.com/kubernetes-sigs/kustomize
+        ref: v1.0.6
+        configuredIn: examples/multibases/production/kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: PrefixTransformer
+  labels:
+    app: myapp
+  name: prod-myapp-pod
+spec:
+  containers:
+  - image: nginx:1.7.9
+    name: nginx
+`, string(yml))
+	assert.NoError(t, fSys.RemoveAll(tmpDir.String()))
+}
+
+func TestAnnoTransformerBuiltinInline(t *testing.T) {
+	th := kusttest_test.MakeEnhancedHarness(t)
+	defer th.Reset()
+
+	th.WriteF("resource.yaml", `
+apiVersion: apps/v1
+kind: ConfigMap
+metadata:
+  name: whatever
+data: {}
+`)
+	th.WriteK(".", `
+resources:
+- resource.yaml
+transformers:
+- |-
+  apiVersion: builtin
+  kind: NamespaceTransformer
+  metadata:
+    name: not-important-to-example
+    namespace: test
+  fieldSpecs:
+  - path: metadata/namespace
+    create: true
+buildMetadata: [transformerAnnotations]
+`)
+
+	expected := `
+apiVersion: apps/v1
+data: {}
+kind: ConfigMap
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: NamespaceTransformer
+          name: not-important-to-example
+          namespace: test
+  name: whatever
+  namespace: test
+`
+	m := th.Run(".", th.MakeDefaultOptions())
+	th.AssertActualEqualsExpected(m, expected)
+}
+
+func TestAnnoOriginCustomInlineTransformer(t *testing.T) {
+	fSys := filesys.MakeFsOnDisk()
+
+	th := kusttest_test.MakeHarnessWithFs(t, fSys)
+	o := th.MakeOptionsPluginsEnabled()
+	o.PluginConfig.FnpLoadingOptions.EnableExec = true
+
+	tmpDir, err := filesys.NewTmpConfirmedDir()
+	assert.NoError(t, err)
+	th.WriteK(tmpDir.String(), `
+transformers:
+- |-
+  kind: executable
+  metadata:
+    name: demo
+    annotations:
+      config.kubernetes.io/function: |
+        exec:
+          path: ./generateDeployment.sh
+  spec:
+buildMetadata: [transformerAnnotations]
+`)
+
+	// generateDeploymentWithOriginDotSh creates a resource that already has an origin annotation,
+	// which will cause kustomize to record the plugin origin data as a transformation
+	th.WriteF(filepath.Join(tmpDir.String(), "generateDeployment.sh"), generateDeploymentWithOriginDotSh)
+
+	assert.NoError(t, os.Chmod(filepath.Join(tmpDir.String(), "generateDeployment.sh"), 0777))
+	th.WriteF(filepath.Join(tmpDir.String(), "gener.yaml"), `
+kind: executable
+metadata:
+  name: demo
+  annotations:
+    config.kubernetes.io/function: |
+      exec:
+        path: ./generateDeployment.sh
+spec:
+`)
+
+	m := th.Run(tmpDir.String(), o)
+	assert.NoError(t, err)
+	yml, err := m.AsYaml()
+	assert.NoError(t, err)
+	assert.Equal(t, `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: kustomization.yaml
+        configuredBy:
+          kind: executable
+          name: demo
+    tshirt-size: small
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  selector:
+    matchLabels:
+      app: nginx
+  template:
+    metadata:
+      labels:
+        app: nginx
+    spec:
+      containers:
+      - image: nginx
+        name: nginx
+`, string(yml))
+	assert.NoError(t, fSys.RemoveAll(tmpDir.String()))
+}
+
+func TestAnnoOriginCustomExecTransformerWithOverlay(t *testing.T) {
+	fSys := filesys.MakeFsOnDisk()
+
+	th := kusttest_test.MakeHarnessWithFs(t, fSys)
+	o := th.MakeOptionsPluginsEnabled()
+	o.PluginConfig.FnpLoadingOptions.EnableExec = true
+
+	tmpDir, err := filesys.NewTmpConfirmedDir()
+	assert.NoError(t, err)
+	base := filepath.Join(tmpDir.String(), "base")
+	prod := filepath.Join(tmpDir.String(), "prod")
+	assert.NoError(t, fSys.Mkdir(base))
+	assert.NoError(t, fSys.Mkdir(prod))
+	th.WriteK(base, `
+transformers:
+- gener.yaml
+`)
+	th.WriteK(prod, `
+resources:
+- ../base
+buildMetadata: [transformerAnnotations]
+`)
+	th.WriteF(filepath.Join(base, "gener.yaml"), `
+kind: executable
+metadata:
+  name: demo
+  annotations:
+    config.kubernetes.io/function: |
+      exec:
+        path: ./generateDeployment.sh
+spec:
+`)
+	// generateDeploymentWithOriginDotSh creates a resource that already has an origin annotation,
+	// which will cause kustomize to record the plugin origin data as a transformation
+	th.WriteF(filepath.Join(base, "generateDeployment.sh"), generateDeploymentWithOriginDotSh)
+	assert.NoError(t, os.Chmod(filepath.Join(base, "generateDeployment.sh"), 0777))
+
+	m := th.Run(prod, o)
+	assert.NoError(t, err)
+	yml, err := m.AsYaml()
+	assert.NoError(t, err)
+	assert.Equal(t, `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - configuredIn: ../base/gener.yaml
+        configuredBy:
+          kind: executable
+          name: demo
+    tshirt-size: small
+  labels:
+    app: nginx
+  name: nginx
+spec:
+  selector:
+    matchLabels:
+      app: nginx
+  template:
+    metadata:
+      labels:
+        app: nginx
+    spec:
+      containers:
+      - image: nginx
+        name: nginx
+`, string(yml))
+	assert.NoError(t, fSys.RemoveAll(tmpDir.String()))
+}

api/loader/errors.go

@@ -0,0 +1,5 @@
+package loader
+
+import "fmt"
+
+var ErrorHTTP = fmt.Errorf("HTTP Error")

api/loader/fileloader.go

@@ -4,6 +4,7 @@
 package loader
 
 import (
+	"errors"
 	"fmt"
 	"io/ioutil"
 	"log"
@@ -158,8 +159,8 @@ func demandDirectoryRoot(
 	}
 	if f != "" {
 		return "", fmt.Errorf(
-			"got file '%s', but '%s' must be a directory to be a root",
-			f, path)
+			"'%s' must be a directory so that it can used as a build root",
+			path)
 	}
 	return d, nil
 }
@@ -298,7 +299,7 @@ func (fl *fileLoader) errIfRepoCycle(newRepoSpec *git.RepoSpec) error {
 }
 
 // Load returns the content of file at the given path,
-// else an error.  Relative paths are taken relative
+// else an error. Relative paths are taken relative
 // to the root.
 func (fl *fileLoader) Load(path string) ([]byte, error) {
 	if u, err := url.Parse(path); err == nil && (u.Scheme == "http" || u.Scheme == "https") {
@@ -313,6 +314,13 @@ func (fl *fileLoader) Load(path string) ([]byte, error) {
 			return nil, err
 		}
 		defer resp.Body.Close()
+		if resp.StatusCode < 200 || resp.StatusCode > 299 {
+			_, err := git.NewRepoSpecFromUrl(path)
+			if err == nil {
+				return nil, errors.New("URL is a git repository")
+			}
+			return nil, fmt.Errorf("%w: status code %d (%s)", ErrorHTTP, resp.StatusCode, http.StatusText(resp.StatusCode))
+		}
 		body, err := ioutil.ReadAll(resp.Body)
 		if err != nil {
 			return nil, err

api/resmap/idslice.go

@@ -33,5 +33,5 @@ func (a IdSlice) Less(i, j int) bool {
 	if !a[i].Gvk.Equals(a[j].Gvk) {
 		return a[i].Gvk.IsLessThan(a[j].Gvk)
 	}
-	return a[i].String() < a[j].String()
+	return a[i].LegacySortString() < a[j].LegacySortString()
 }

api/resmap/resmap.go

@@ -21,11 +21,25 @@ type Transformer interface {
 	Transform(m ResMap) error
 }
 
+// A TransformerWithProperties contains a Transformer and stores
+// some of its properties
+type TransformerWithProperties struct {
+	Transformer
+	Origin *resource.Origin
+}
+
 // A Generator creates an instance of ResMap.
 type Generator interface {
 	Generate() (ResMap, error)
 }
 
+// A GeneratorWithProperties contains a Generator and stores
+// some of its properties
+type GeneratorWithProperties struct {
+	Generator
+	Origin *resource.Origin
+}
+
 // Something that's configurable accepts an
 // instance of PluginHelpers and a raw config
 // object (YAML in []byte form).
@@ -136,6 +150,25 @@ type ResMap interface {
 	// self, then its behavior _cannot_ be merge or replace.
 	AbsorbAll(ResMap) error
 
+	// AddOriginAnnotation will add the provided origin as
+	// an origin annotation to all resources in the ResMap, if
+	// the origin is not nil.
+	AddOriginAnnotation(origin *resource.Origin) error
+
+	// RemoveOriginAnnotation will remove the origin annotation
+	// from all resources in the ResMap
+	RemoveOriginAnnotations() error
+
+	// AddTransformerAnnotation will add the provided origin as
+	// an origin annotation if the resource doesn't have one; a
+	// transformer annotation otherwise; to all resources in
+	// ResMap
+	AddTransformerAnnotation(origin *resource.Origin) error
+
+	// RemoveTransformerAnnotation will remove the transformer annotation
+	// from all resources in the ResMap
+	RemoveTransformerAnnotations() error
+
 	// AnnotateAll annotates all resources in the ResMap with
 	// the provided key value pair.
 	AnnotateAll(key string, value string) error
@@ -212,7 +245,7 @@ type ResMap interface {
 	// This is a filter; it excludes things that cannot be
 	// referenced by the resource, e.g. objects in other
 	// namespaces. Cluster wide objects are never excluded.
-	SubsetThatCouldBeReferencedByResource(*resource.Resource) ResMap
+	SubsetThatCouldBeReferencedByResource(*resource.Resource) (ResMap, error)
 
 	// DeAnchor replaces YAML aliases with structured data copied from anchors.
 	// This cannot be undone; if desired, call DeepCopy first.

api/resmap/reswrangler.go

@@ -389,14 +389,17 @@ func (m *resWrangler) makeCopy(copier resCopier) ResMap {
 
 // SubsetThatCouldBeReferencedByResource implements ResMap.
 func (m *resWrangler) SubsetThatCouldBeReferencedByResource(
-	referrer *resource.Resource) ResMap {
+	referrer *resource.Resource) (ResMap, error) {
 	referrerId := referrer.CurId()
 	if referrerId.IsClusterScoped() {
 		// A cluster scoped resource can refer to anything.
-		return m
+		return m, nil
 	}
 	result := newOne()
-	roleBindingNamespaces := getNamespacesForRoleBinding(referrer)
+	roleBindingNamespaces, err := getNamespacesForRoleBinding(referrer)
+	if err != nil {
+		return nil, err
+	}
 	for _, possibleTarget := range m.rList {
 		id := possibleTarget.CurId()
 		if id.IsClusterScoped() {
@@ -416,32 +419,36 @@ func (m *resWrangler) SubsetThatCouldBeReferencedByResource(
 			result.append(possibleTarget)
 		}
 	}
-	return result
+	return result, nil
 }
 
 // getNamespacesForRoleBinding returns referenced ServiceAccount namespaces
 // if the resource is a RoleBinding
-func getNamespacesForRoleBinding(r *resource.Resource) map[string]bool {
+func getNamespacesForRoleBinding(r *resource.Resource) (map[string]bool, error) {
 	result := make(map[string]bool)
 	if r.GetKind() != "RoleBinding" {
-		return result
+		return result, nil
 	}
 	//nolint staticcheck
 	subjects, err := r.GetSlice("subjects")
 	if err != nil || subjects == nil {
-		return result
+		return result, nil
 	}
 	for _, s := range subjects {
 		subject := s.(map[string]interface{})
 		if ns, ok1 := subject["namespace"]; ok1 {
 			if kind, ok2 := subject["kind"]; ok2 {
 				if kind.(string) == "ServiceAccount" {
-					result[ns.(string)] = true
+					if n, ok3 := ns.(string); ok3 {
+						result[n] = true
+					} else {
+						return nil, errors.New(fmt.Sprintf("Invalid Input: namespace is blank for resource %q\n", r.CurId()))
+					}
 				}
 			}
 		}
 	}
-	return result
+	return result, nil
 }
 
 // AppendAll implements ResMap.
@@ -484,6 +491,69 @@ func (m *resWrangler) AbsorbAll(other ResMap) error {
 	return nil
 }
 
+// AddOriginAnnotation implements ResMap.
+func (m *resWrangler) AddOriginAnnotation(origin *resource.Origin) error {
+	if origin == nil {
+		return nil
+	}
+	for _, res := range m.rList {
+		or, err := res.GetOrigin()
+		if or != nil || err != nil {
+			// if any resources already have an origin annotation,
+			// skip it
+			continue
+		}
+		if err := res.SetOrigin(origin); err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
+// RemoveOriginAnnotation implements ResMap
+func (m *resWrangler) RemoveOriginAnnotations() error {
+	for _, res := range m.rList {
+		if err := res.SetOrigin(nil); err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
+// AddTransformerAnnotation implements ResMap
+func (m *resWrangler) AddTransformerAnnotation(origin *resource.Origin) error {
+	for _, res := range m.rList {
+		or, err := res.GetOrigin()
+		if err != nil {
+			return err
+		}
+		if or == nil {
+			// the resource does not have an origin annotation, so
+			// we assume that the transformer generated the resource
+			// rather than modifying it
+			err = res.SetOrigin(origin)
+		} else {
+			// the resource already has an origin annotation, so we
+			// record the provided origin as a transformation
+			err = res.AddTransformation(origin)
+		}
+		if err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
+// RemoveTransformerAnnotations implements ResMap
+func (m *resWrangler) RemoveTransformerAnnotations() error {
+	for _, res := range m.rList {
+		if err := res.ClearTransformations(); err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
 func (m *resWrangler) appendReplaceOrMerge(res *resource.Resource) error {
 	id := res.CurId()
 	matches := m.GetMatchingResourcesByAnyId(id.Equals)
@@ -510,9 +580,18 @@ func (m *resWrangler) appendReplaceOrMerge(res *resource.Resource) error {
 		case types.BehaviorReplace:
 			res.CopyMergeMetaDataFieldsFrom(old)
 		case types.BehaviorMerge:
+			// ensure the origin annotation doesn't get overwritten
+			orig, err := old.GetOrigin()
+			if err != nil {
+				return err
+			}
 			res.CopyMergeMetaDataFieldsFrom(old)
 			res.MergeDataMapFrom(old)
 			res.MergeBinaryDataMapFrom(old)
+			if orig != nil {
+				res.SetOrigin(orig)
+			}
+
 		default:
 			return fmt.Errorf(
 				"id %#v exists; behavior must be merge or replace", id)

api/resmap/reswrangler_test.go

@@ -26,6 +26,34 @@ import (
 var depProvider = provider.NewDefaultDepProvider()
 var rf = depProvider.GetResourceFactory()
 var rmF = NewFactory(rf)
+var origin1 = &resource.Origin{
+	Repo:         "github.com/myrepo",
+	Ref:          "master",
+	ConfiguredIn: "config.yaml",
+	ConfiguredBy: yaml.ResourceIdentifier{
+		TypeMeta: yaml.TypeMeta{
+			APIVersion: "builtin",
+			Kind:       "Generator",
+		},
+		NameMeta: yaml.NameMeta{
+			Name:      "my-name",
+			Namespace: "my-namespace",
+		},
+	},
+}
+var origin2 = &resource.Origin{
+	ConfiguredIn: "../base/config.yaml",
+	ConfiguredBy: yaml.ResourceIdentifier{
+		TypeMeta: yaml.TypeMeta{
+			APIVersion: "builtin",
+			Kind:       "Generator",
+		},
+		NameMeta: yaml.NameMeta{
+			Name:      "my-name",
+			Namespace: "my-namespace",
+		},
+	},
+}
 
 func doAppend(t *testing.T, w ResMap, r *resource.Resource) {
 	err := w.Append(r)
@@ -566,7 +594,10 @@ func TestSubsetThatCouldBeReferencedByResource(t *testing.T) {
 	for name, test := range tests {
 		test := test
 		t.Run(name, func(t *testing.T) {
-			got := m.SubsetThatCouldBeReferencedByResource(test.filter)
+			got, err1 := m.SubsetThatCouldBeReferencedByResource(test.filter)
+			if err1 != nil {
+				t.Fatalf("Expected error %v: ", err1)
+			}
 			err := test.expected.ErrorIfNotEqualLists(got)
 			if err != nil {
 				test.expected.Debug("expected")
@@ -927,6 +958,53 @@ metadata:
 `), strings.TrimSpace(string(yaml)))
 }
 
+func TestDeAnchorIntoDoc(t *testing.T) {
+	input := `apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: probes-test
+spec:
+  template:
+    spec:
+      readinessProbe: &probe
+        periodSeconds: 5
+        timeoutSeconds: 3
+        failureThreshold: 3
+        httpGet:
+          port: http
+          path: /health
+      livenessProbe:
+        <<: *probe
+`
+	rm, err := rmF.NewResMapFromBytes([]byte(input))
+	assert.NoError(t, err)
+	assert.NoError(t, rm.DeAnchor())
+	yaml, err := rm.AsYaml()
+	assert.NoError(t, err)
+	assert.Equal(t, strings.TrimSpace(`apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: probes-test
+spec:
+  template:
+    spec:
+      livenessProbe:
+        failureThreshold: 3
+        httpGet:
+          path: /health
+          port: http
+        periodSeconds: 5
+        timeoutSeconds: 3
+      readinessProbe:
+        failureThreshold: 3
+        httpGet:
+          path: /health
+          port: http
+        periodSeconds: 5
+        timeoutSeconds: 3
+`), strings.TrimSpace(string(yaml)))
+}
+
 // Anchor references don't cross YAML document boundaries.
 func TestDeAnchorMultiDoc(t *testing.T) {
 	input := `apiVersion: v1
@@ -1527,6 +1605,67 @@ $patch: delete
 	}
 }
 
+func TestOriginAnnotations(t *testing.T) {
+	w := New()
+	for i := 0; i < 3; i++ {
+		assert.NoError(t, w.Append(makeCm(i)))
+	}
+	// this should add an origin annotation to every resource
+	assert.NoError(t, w.AddOriginAnnotation(origin1))
+	resources := w.Resources()
+	for _, res := range resources {
+		or, err := res.GetOrigin()
+		assert.NoError(t, err)
+		assert.Equal(t, origin1, or)
+	}
+	// this should not overwrite the existing origin annotations
+	assert.NoError(t, w.AddOriginAnnotation(origin2))
+	for _, res := range resources {
+		or, err := res.GetOrigin()
+		assert.NoError(t, err)
+		assert.Equal(t, origin1, or)
+	}
+	// this should remove origin annotations from all resources
+	assert.NoError(t, w.RemoveOriginAnnotations())
+	for _, res := range resources {
+		or, err := res.GetOrigin()
+		assert.NoError(t, err)
+		assert.Nil(t, or)
+	}
+}
+
+func TestTransformerAnnotations(t *testing.T) {
+	w := New()
+	for i := 0; i < 3; i++ {
+		assert.NoError(t, w.Append(makeCm(i)))
+	}
+	// this should add an origin annotation to every resource
+	assert.NoError(t, w.AddTransformerAnnotation(origin1))
+	resources := w.Resources()
+	for _, res := range resources {
+		or, err := res.GetOrigin()
+		assert.NoError(t, err)
+		assert.Equal(t, origin1, or)
+	}
+	// this should add a transformer annotation to every resource
+	assert.NoError(t, w.AddTransformerAnnotation(origin2))
+	for _, res := range resources {
+		or, err := res.GetOrigin()
+		assert.NoError(t, err)
+		assert.Equal(t, origin1, or)
+		tr, err := res.GetTransformations()
+		assert.NoError(t, err)
+		assert.Equal(t, resource.Transformations{origin2}, tr)
+	}
+	// remove transformer annotations from all resources
+	assert.NoError(t, w.RemoveTransformerAnnotations())
+	for _, res := range resources {
+		tr, err := res.GetTransformations()
+		assert.NoError(t, err)
+		assert.Nil(t, tr)
+	}
+}
+
 // baseResource produces a base object which used to test
 // patch transformation
 // Also the structure is matching the Deployment syntax

api/resource/factory_test.go

@@ -335,13 +335,7 @@ kind: List
 		"listWithAnchorReference": {
 			input:       []types.PatchStrategicMerge{patchList2},
 			expectedOut: []*Resource{testDeploymentA, testDeploymentB},
-			// The error using kyaml is:
-			//   json: unsupported type: map[interface {}]interface {}
-			// maybe arising from too many conversions between
-			// yaml, json, Resource, RNode, etc.
-			// These conversions go away after closing #3506
-			// TODO(#3271) This shouldn't have an error, but does when kyaml is used.
-			expectedErr: true,
+			expectedErr: false,
 		},
 		"listWithNoEntries": {
 			input:       []types.PatchStrategicMerge{patchList3},

api/resource/origin.go

@@ -11,20 +11,32 @@ import (
 	kyaml "sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
-// Origin retains information about where resources in the output
-// of `kustomize build` originated from
+// Origin retains information about the origin of resources and transformer configs
+// that contributed to the output of `kustomize build`
 type Origin struct {
-	// Path is the path to the resource, rooted from the directory upon
-	// which `kustomize build` was invoked
+	// Path is the path to the resource. If a local resource, this path is
+	// rooted from the directory upon which `kustomize build` was invoked. If a
+	// remote resource, this path is rooted from the root of the remote repo.
 	Path string `json:"path,omitempty" yaml:"path,omitempty"`
 
-	// Repo is the remote repository that the resource originated from if it is
+	// Repo is the remote repository that the resource or transformer originated from if it is
 	// not from a local file
 	Repo string `json:"repo,omitempty" yaml:"repo,omitempty"`
 
-	// Ref is the ref of the remote repository that the resource originated from
+	// Ref is the ref of the remote repository that the resource or transformer originated from
 	// if it is not from a local file
 	Ref string `json:"ref,omitempty" yaml:"ref,omitempty"`
+
+	// The following fields only apply to resources that have been
+	// generated by fields other than the `resources` field, or to transformer
+	// configs.
+
+	// ConfiguredIn is the file path to the generator or transformer config that created the
+	// resource
+	ConfiguredIn string `json:"configuredIn,omitempty" yaml:"configuredIn,omitempty"`
+
+	// ConfiguredBy is the ObjectReference of the generator or transformer config
+	ConfiguredBy kyaml.ResourceIdentifier `json:"configuredBy,omitempty" yaml:"configuredBy,omitempty"`
 }
 
 // Copy returns a copy of origin
@@ -55,3 +67,40 @@ func (origin *Origin) String() (string, error) {
 	anno, err := kyaml.Marshal(origin)
 	return string(anno), err
 }
+
+// Transformations is a list of Origin
+type Transformations []*Origin
+
+// String returns a string version of Transformations
+func (transformations *Transformations) String() (string, error) {
+	anno, err := kyaml.Marshal(transformations)
+	return string(anno), err
+}
+
+// OriginFromCustomPlugin takes a custom plugin defined as a resource
+// and returns an origin object to describe it
+func OriginFromCustomPlugin(res *Resource) (*Origin, error) {
+	origin, err := res.GetOrigin()
+	if err != nil {
+		return nil, err
+	}
+	var result *Origin
+	if origin != nil {
+		result = &Origin{
+			Repo:         origin.Repo,
+			Ref:          origin.Ref,
+			ConfiguredIn: origin.Path,
+			ConfiguredBy: kyaml.ResourceIdentifier{
+				TypeMeta: kyaml.TypeMeta{
+					APIVersion: res.GetApiVersion(),
+					Kind:       res.GetKind(),
+				},
+				NameMeta: kyaml.NameMeta{
+					Name:      res.GetName(),
+					Namespace: res.GetNamespace(),
+				},
+			},
+		}
+	}
+	return result, nil
+}

api/resource/origin_test.go

@@ -8,6 +8,7 @@ import (
 
 	"github.com/stretchr/testify/assert"
 	. "sigs.k8s.io/kustomize/api/resource"
+	kyaml "sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 func TestOriginAppend(t *testing.T) {
@@ -78,6 +79,82 @@ repo: github.com/kubernetes-sigs/kustomize/examples/multibases/dev/
 	for _, test := range tests {
 		actual, err := test.in.String()
 		assert.NoError(t, err)
-		assert.Equal(t, actual, test.expected)
+		assert.Equal(t, test.expected, actual)
+	}
+}
+
+func TestTransformationsString(t *testing.T) {
+	origin1 := &Origin{
+		Repo:         "github.com/myrepo",
+		Ref:          "master",
+		ConfiguredIn: "config.yaml",
+		ConfiguredBy: kyaml.ResourceIdentifier{
+			TypeMeta: kyaml.TypeMeta{
+				APIVersion: "builtin",
+				Kind:       "Generator",
+			},
+			NameMeta: kyaml.NameMeta{
+				Name:      "my-name",
+				Namespace: "my-namespace",
+			},
+		},
+	}
+	origin2 := &Origin{
+		ConfiguredIn: "../base/config.yaml",
+		ConfiguredBy: kyaml.ResourceIdentifier{
+			TypeMeta: kyaml.TypeMeta{
+				APIVersion: "builtin",
+				Kind:       "Generator",
+			},
+			NameMeta: kyaml.NameMeta{
+				Name:      "my-name",
+				Namespace: "my-namespace",
+			},
+		},
+	}
+	tests := []struct {
+		in       Transformations
+		expected string
+	}{
+		{
+			in: Transformations{origin1},
+			expected: `- repo: github.com/myrepo
+  ref: master
+  configuredIn: config.yaml
+  configuredBy:
+    apiVersion: builtin
+    kind: Generator
+    name: my-name
+    namespace: my-namespace
+`,
+		},
+		{
+			in: Transformations{origin1, origin2},
+			expected: `- repo: github.com/myrepo
+  ref: master
+  configuredIn: config.yaml
+  configuredBy:
+    apiVersion: builtin
+    kind: Generator
+    name: my-name
+    namespace: my-namespace
+- configuredIn: ../base/config.yaml
+  configuredBy:
+    apiVersion: builtin
+    kind: Generator
+    name: my-name
+    namespace: my-namespace
+`,
+		},
+		{
+			in: Transformations{},
+			expected: `[]
+`,
+		},
+	}
+	for _, test := range tests {
+		actual, err := test.in.String()
+		assert.NoError(t, err)
+		assert.Equal(t, test.expected, actual)
 	}
 }

api/resource/resource.go

@@ -67,6 +67,70 @@ func (r *Resource) SetGvk(gvk resid.Gvk) {
 	r.SetApiVersion(gvk.ApiVersion())
 }
 
+func (r *Resource) GetOrigin() (*Origin, error) {
+	annotations := r.GetAnnotations()
+	originAnnotations, ok := annotations[utils.OriginAnnotationKey]
+	if !ok {
+		return nil, nil
+	}
+	var origin Origin
+	if err := yaml.Unmarshal([]byte(originAnnotations), &origin); err != nil {
+		return nil, err
+	}
+	return &origin, nil
+}
+
+func (r *Resource) SetOrigin(origin *Origin) error {
+	annotations := r.GetAnnotations()
+	if origin == nil {
+		delete(annotations, utils.OriginAnnotationKey)
+	} else {
+		originStr, err := origin.String()
+		if err != nil {
+			return err
+		}
+		annotations[utils.OriginAnnotationKey] = originStr
+	}
+	return r.SetAnnotations(annotations)
+}
+
+func (r *Resource) GetTransformations() (Transformations, error) {
+	annotations := r.GetAnnotations()
+	transformerAnnotations, ok := annotations[utils.TransformerAnnotationKey]
+	if !ok {
+		return nil, nil
+	}
+	var transformations Transformations
+	if err := yaml.Unmarshal([]byte(transformerAnnotations), &transformations); err != nil {
+		return nil, err
+	}
+	return transformations, nil
+}
+
+func (r *Resource) AddTransformation(origin *Origin) error {
+	annotations := r.GetAnnotations()
+	transformations, err := r.GetTransformations()
+	if err != nil {
+		return err
+	}
+	if transformations == nil {
+		transformations = Transformations{}
+	}
+	transformations = append(transformations, origin)
+	transformationStr, err := transformations.String()
+	if err != nil {
+		return err
+	}
+	annotations[utils.TransformerAnnotationKey] = transformationStr
+	return r.SetAnnotations(annotations)
+}
+
+func (r *Resource) ClearTransformations() error {
+	annotations := r.GetAnnotations()
+	delete(annotations, utils.TransformerAnnotationKey)
+	return r.SetAnnotations(annotations)
+}
+
 // ResCtx is an interface describing the contextual added
 // kept kustomize in the context of each Resource object.
 // Currently mainly the name prefix and name suffix are added.

api/resource/resource_test.go

@@ -14,6 +14,7 @@ import (
 	. "sigs.k8s.io/kustomize/api/resource"
 	"sigs.k8s.io/kustomize/api/types"
 	"sigs.k8s.io/kustomize/kyaml/resid"
+	kyaml "sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 var factory = provider.NewDefaultDepProvider().GetResourceFactory()
@@ -1427,3 +1428,129 @@ spec:
 		resid.FromString("knd2.ver2.gr2/name2.ns2"),
 	})
 }
+
+func TestOrigin(t *testing.T) {
+	r, err := factory.FromBytes([]byte(`
+apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+spec:
+  numReplicas: 1
+`))
+	assert.NoError(t, err)
+	origin := &Origin{
+		Path: "deployment.yaml",
+		Repo: "github.com/myrepo",
+		Ref:  "master",
+	}
+	assert.NoError(t, r.SetOrigin(origin))
+	assert.Equal(t, `apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+  annotations:
+    config.kubernetes.io/origin: |
+      path: deployment.yaml
+      repo: github.com/myrepo
+      ref: master
+spec:
+  numReplicas: 1
+`, r.MustString())
+	or, err := r.GetOrigin()
+	assert.NoError(t, err)
+	assert.Equal(t, origin, or)
+}
+
+func TestTransformations(t *testing.T) {
+	r, err := factory.FromBytes([]byte(`
+apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+spec:
+  numReplicas: 1
+`))
+	assert.NoError(t, err)
+	origin1 := &Origin{
+		Repo:         "github.com/myrepo",
+		Ref:          "master",
+		ConfiguredIn: "config.yaml",
+		ConfiguredBy: kyaml.ResourceIdentifier{
+			TypeMeta: kyaml.TypeMeta{
+				APIVersion: "builtin",
+				Kind:       "Generator",
+			},
+			NameMeta: kyaml.NameMeta{
+				Name:      "my-name",
+				Namespace: "my-namespace",
+			},
+		},
+	}
+	origin2 := &Origin{
+		ConfiguredIn: "../base/config.yaml",
+		ConfiguredBy: kyaml.ResourceIdentifier{
+			TypeMeta: kyaml.TypeMeta{
+				APIVersion: "builtin",
+				Kind:       "Generator",
+			},
+			NameMeta: kyaml.NameMeta{
+				Name:      "my-name",
+				Namespace: "my-namespace",
+			},
+		},
+	}
+	assert.NoError(t, r.AddTransformation(origin1))
+	assert.Equal(t, `apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - repo: github.com/myrepo
+        ref: master
+        configuredIn: config.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: Generator
+          name: my-name
+          namespace: my-namespace
+spec:
+  numReplicas: 1
+`, r.MustString())
+	assert.NoError(t, r.AddTransformation(origin2))
+	assert.Equal(t, `apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+  annotations:
+    alpha.config.kubernetes.io/transformations: |
+      - repo: github.com/myrepo
+        ref: master
+        configuredIn: config.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: Generator
+          name: my-name
+          namespace: my-namespace
+      - configuredIn: ../base/config.yaml
+        configuredBy:
+          apiVersion: builtin
+          kind: Generator
+          name: my-name
+          namespace: my-namespace
+spec:
+  numReplicas: 1
+`, r.MustString())
+	transformations, err := r.GetTransformations()
+	assert.NoError(t, err)
+	assert.Equal(t, Transformations{origin1, origin2}, transformations)
+	assert.NoError(t, r.ClearTransformations())
+	assert.Equal(t, `apiVersion: v1
+kind: Deployment
+metadata:
+  name: clown
+spec:
+  numReplicas: 1
+`, r.MustString())
+}

api/testutils/filtertest/runfilter.go

@@ -9,6 +9,7 @@ import (
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/kyaml/kio"
+	"sigs.k8s.io/kustomize/kyaml/yaml"
 )
 
 func run(input string, f kio.Filter) (string, error) {
@@ -46,3 +47,32 @@ func RunFilterE(t *testing.T, input string, f kio.Filter) (string, error) {
 	}
 	return output, nil
 }
+
+type SetValueArg struct {
+	Key      string
+	Value    string
+	Tag      string
+	NodePath []string
+}
+
+// MutationTrackerStub to help stub a mutation tracker for kio.TrackableFilter
+type MutationTrackerStub struct {
+	setValueArgs []SetValueArg
+}
+
+func (mts *MutationTrackerStub) MutationTracker(key, value, tag string, node *yaml.RNode) {
+	mts.setValueArgs = append(mts.setValueArgs, SetValueArg{
+		Key:      key,
+		Value:    value,
+		Tag:      tag,
+		NodePath: node.FieldPath(),
+	})
+}
+
+func (mts *MutationTrackerStub) SetValueArgs() []SetValueArg {
+	return mts.setValueArgs
+}
+
+func (mts *MutationTrackerStub) Reset() {
+	mts.setValueArgs = nil
+}

api/types/kustomization.go

@@ -17,9 +17,14 @@ const (
 	ComponentVersion      = "kustomize.config.k8s.io/v1alpha1"
 	ComponentKind         = "Component"
 	MetadataNamespacePath = "metadata/namespace"
-	OriginAnnotations     = "originAnnotations"
+
+	OriginAnnotations      = "originAnnotations"
+	TransformerAnnotations = "transformerAnnotations"
+	ManagedByLabelOption   = "managedByLabel"
 )
 
+var BuildMetadataOptions = []string{OriginAnnotations, TransformerAnnotations, ManagedByLabelOption}
+
 // Kustomization holds the information needed to generate customized k8s api resources.
 type Kustomization struct {
 	TypeMeta `json:",inline" yaml:",inline"`
@@ -56,7 +61,7 @@ type Kustomization struct {
 
 	// PatchesStrategicMerge specifies the relative path to a file
 	// containing a strategic merge patch.  Format documented at
-	// https://github.com/kubernetes/community/blob/master/contributors/devel/strategic-merge-patch.md
+	// https://github.com/kubernetes/community/blob/master/contributors/devel/sig-api-machinery/strategic-merge-patch.md
 	// URLs and globs are not supported.
 	PatchesStrategicMerge []PatchStrategicMerge `json:"patchesStrategicMerge,omitempty" yaml:"patchesStrategicMerge,omitempty"`
 

cmd/config/Makefile

@@ -40,7 +40,7 @@ lint: $(GOBIN)/golangci-lint
 
 license: $(GOBIN)/addlicense
 	$(GOBIN)/addlicense \
-	  -y 2021 \
+	  -y 2022 \
 	  -c "The Kubernetes Authors." \
 	  -f LICENSE_TEMPLATE .
 

cmd/config/docs/commands/run-fns.md

@@ -1,6 +1,6 @@
 ## run
 
-[Alpha] Reoncile config functions to Resources.
+[Alpha] Reconcile config functions to Resources.
 
 ### Synopsis
 
@@ -46,7 +46,7 @@ order they appear in the file).
   would then write the container stdout back to example/, replacing the directory
   file contents.
 
-  See `kustomize help cfg docs-fn` for more details on writing functions.
+  See `kustomize docs-fn` for more details on writing functions.
 
 ### Examples
 

cmd/config/go.mod

@@ -4,19 +4,13 @@ go 1.16
 
 require (
 	github.com/go-errors/errors v1.0.1
-	github.com/google/go-cmp v0.5.2 // indirect
-	github.com/google/uuid v1.1.2 // indirect
 	github.com/kr/text v0.2.0 // indirect
 	github.com/niemeyer/pretty v0.0.0-20200227124842-a10e7caefd8e // indirect
 	github.com/olekukonko/tablewriter v0.0.4
-	github.com/spf13/cobra v1.0.0
-	github.com/stretchr/testify v1.6.1
-	golang.org/x/net v0.0.0-20201110031124-69a78807bb2b // indirect
-	golang.org/x/text v0.3.4 // indirect
+	github.com/spf13/cobra v1.2.1
+	github.com/stretchr/testify v1.7.0
 	gopkg.in/check.v1 v1.0.0-20200227125254-8fa46927fb4f // indirect
 	gopkg.in/inf.v0 v0.9.1
 	k8s.io/kube-openapi v0.0.0-20210421082810-95288971da7e
-	sigs.k8s.io/kustomize/kyaml v0.13.0
+	sigs.k8s.io/kustomize/kyaml v0.13.6
 )
-
-replace sigs.k8s.io/kustomize/kyaml => ../../kyaml

cmd/config/go.sum

@@ -1,44 +1,89 @@
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@@ -46,205 +91,564 @@ github.com/go-openapi/jsonreference v0.19.3 h1:5cxNfTy0UVC3X8JL5ymxzyoUZmo8iZb+j
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 k8s.io/kube-openapi v0.0.0-20210421082810-95288971da7e/go.mod h1:vHXdDvt9+2spS2Rx9ql3I8tycm3H9FDfdUoIuKCefvw=
+rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8=
+rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0=
+rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA=
+sigs.k8s.io/kustomize/kyaml v0.13.6 h1:eF+wsn4J7GOAXlvajv6OknSunxpcOBQQqsnPxObtkGs=
+sigs.k8s.io/kustomize/kyaml v0.13.6/go.mod h1:yHP031rn1QX1lr/Xd934Ri/xdVNG8BE2ECa78Ht/kEg=
 sigs.k8s.io/structured-merge-diff/v4 v4.0.2/go.mod h1:bJZC9H9iH24zzfZ/41RGcq60oK1F7G282QMXDPYydCw=
 sigs.k8s.io/yaml v1.2.0 h1:kr/MCeFWJWTwyaHoR9c8EjH9OumOmoF9YGiZd7lFm/Q=
 sigs.k8s.io/yaml v1.2.0/go.mod h1:yfXDCHCao9+ENCvLSE62v9VSji2MKu5jeNfTrofGhJc=

cmd/config/internal/commands/fmt_test.go

@@ -164,7 +164,7 @@ func TestCmd_failFileContents(t *testing.T) {
 	err := r.Command.Execute()
 
 	// expect an error
-	assert.EqualError(t, err, "yaml: line 1: did not find expected node content")
+	assert.EqualError(t, err, "MalformedYAMLError: yaml: line 1: did not find expected node content")
 }
 
 func TestFmtSubPackages(t *testing.T) {

cmd/config/internal/commands/run-fns.go

@@ -135,9 +135,14 @@ func (r *RunFnRunner) getContainerFunctions(c *cobra.Command, dataItems []string
 			return nil, err
 		}
 		if r.Network {
+			n := &yaml.Node{
+				Kind:  yaml.ScalarNode,
+				Value: "true",
+				Tag:   yaml.NodeTagBool,
+			}
 			err = fn.PipeE(
 				yaml.Lookup("container"),
-				yaml.SetField("network", yaml.NewScalarRNode("true")))
+				yaml.SetField("network", yaml.NewRNode(n)))
 			if err != nil {
 				return nil, err
 			}
@@ -231,7 +236,9 @@ data: {}
 			if len(kv) != 2 {
 				return nil, fmt.Errorf("args must have keys and values separated by =")
 			}
-			err := dataField.PipeE(yaml.SetField(kv[0], yaml.NewScalarRNode(kv[1])))
+			// do not set style since function should determine tag and style
+			err := dataField.PipeE(
+				yaml.FieldSetter{Name: kv[0], Value: yaml.NewScalarRNode(kv[1]), OverrideStyle: true})
 			if err != nil {
 				return nil, err
 			}

cmd/pluginator/go.mod

@@ -4,12 +4,8 @@ go 1.16
 
 require (
 	github.com/rakyll/statik v0.1.7
-	github.com/spf13/cobra v1.0.0
-	github.com/stretchr/testify v1.5.1
-	sigs.k8s.io/kustomize/api v0.10.1
-	sigs.k8s.io/kustomize/kyaml v0.13.0
+	github.com/spf13/cobra v1.2.1
+	github.com/stretchr/testify v1.7.0
+	sigs.k8s.io/kustomize/api v0.11.4
+	sigs.k8s.io/kustomize/kyaml v0.13.6
 )
-
-replace sigs.k8s.io/kustomize/api => ../../api
-
-replace sigs.k8s.io/kustomize/kyaml => ../../kyaml

cmd/pluginator/go.sum

@@ -1,44 +1,90 @@
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docs/api-reference/kustomization/commonlabels/index.xml

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docs/api-reference/kustomization/components/index.xml

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