Merge pull request #3015 from monopole/pinToCmdConfigV0.8.1

Pin to cmd/config/v0.8.1

Makefile

@@ -15,7 +15,8 @@ verify-kustomize: \
 	lint-kustomize \
 	test-unit-kustomize-all \
 	test-examples-kustomize-against-HEAD \
-	test-examples-kustomize-against-3.8.0
+	test-examples-kustomize-against-3.8.0 \
+	test-examples-kustomize-against-3.8.2
 
 # The following target referenced by a file in
 # https://github.com/kubernetes/test-infra/tree/master/config/jobs/kubernetes-sigs/kustomize
@@ -26,7 +27,8 @@ prow-presubmit-check: \
 	test-unit-cmd-all \
 	test-go-mod \
 	test-examples-kustomize-against-HEAD \
-	test-examples-kustomize-against-3.8.0
+	test-examples-kustomize-against-3.8.0 \
+	test-examples-kustomize-against-3.8.2
 
 .PHONY: verify-kustomize-e2e
 verify-kustomize-e2e: test-examples-e2e-kustomize
@@ -45,17 +47,18 @@ $(MYGOBIN)/golangci-lint-kustomize:
 		GO111MODULE=on go build -tags=tools -o $(MYGOBIN)/golangci-lint-kustomize github.com/golangci/golangci-lint/cmd/golangci-lint; \
 	)
 
-# Version pinned by api/go.mod
+$(MYGOBIN)/gorepomod:
+	cd api; \
+	go install github.com/monopole/gorepomod
+
 $(MYGOBIN)/mdrip:
 	cd api; \
 	go install github.com/monopole/mdrip
 
-# Version pinned by api/go.mod
 $(MYGOBIN)/stringer:
 	cd api; \
 	go install golang.org/x/tools/cmd/stringer
 
-# Version pinned by api/go.mod
 $(MYGOBIN)/goimports:
 	cd api; \
 	go install golang.org/x/tools/cmd/goimports
@@ -81,6 +84,7 @@ $(MYGOBIN)/kustomize:
 install-tools: \
 	$(MYGOBIN)/goimports \
 	$(MYGOBIN)/golangci-lint-kustomize \
+	$(MYGOBIN)/gorepomod \
 	$(MYGOBIN)/mdrip \
 	$(MYGOBIN)/pluginator \
 	$(MYGOBIN)/stringer
@@ -245,6 +249,19 @@ test-examples-kustomize-against-3.8.0: $(MYGOBIN)/mdrip
 		cd kustomize; go install .; \
 	)
 
+.PHONY:
+test-examples-kustomize-against-3.8.2: $(MYGOBIN)/mdrip
+	( \
+		set -e; \
+		tag=v3.8.2; \
+		/bin/rm -f $(MYGOBIN)/kustomize; \
+		echo "Installing kustomize $$tag."; \
+		GO111MODULE=on go get sigs.k8s.io/kustomize/kustomize/v3@$${tag}; \
+		./hack/testExamplesAgainstKustomize.sh $$tag; \
+		echo "Reinstalling kustomize from HEAD."; \
+		cd kustomize; go install .; \
+	)
+
 # linux only.
 # This is for testing an example plugin that
 # uses kubeval for validation.

OWNERS_ALIASES

@@ -11,3 +11,4 @@ aliases:
     - pwittrock
     - mortent
     - phanimarupaka
+    - Shell32-Natsu

api/builtins/ImageTagTransformer.go

@@ -31,14 +31,15 @@ func (p *ImageTagTransformerPlugin) Config(
 
 func (p *ImageTagTransformerPlugin) Transform(m resmap.ResMap) error {
 	for _, r := range m.Resources() {
-		// If you're here because someone expected any field containing
-		// the string "containers" or "initContainers" to get an image
-		// update (not just spec/template/spec/containers[], etc.) then
-		// a code change is needed.  See api/filters/imagetag/legacy
-		// for the start of an implementation that won't use an
-		// allowlist like FsSlice, and instead walks the object looking
-		// for fields named containers or initContainers.
-		err := filtersutil.ApplyToJSON(imagetag.Filter{
+		// traverse all fields at first
+		err := filtersutil.ApplyToJSON(imagetag.LegacyFilter{
+			ImageTag: p.ImageTag,
+		}, r)
+		if err != nil {
+			return err
+		}
+		// then use user specified field specs
+		err = filtersutil.ApplyToJSON(imagetag.Filter{
 			ImageTag: p.ImageTag,
 			FsSlice:  p.FieldSpecs,
 		}, r)

api/filters/fieldspec/fieldspec.go

@@ -51,6 +51,9 @@ func (fltr Filter) filter(obj *yaml.RNode) error {
 		// found the field -- set its value
 		return fltr.SetValue(obj)
 	}
+	if obj.IsTaggedNull() {
+		return nil
+	}
 	switch obj.YNode().Kind {
 	case yaml.SequenceNode:
 		return fltr.seq(obj)
@@ -67,7 +70,7 @@ func (fltr Filter) field(obj *yaml.RNode) error {
 	// lookup the field matching the next path element
 	var lookupField yaml.Filter
 	var kind yaml.Kind
-	tag := "" // TODO: change to yaml.NodeTagEmpty
+	tag := yaml.NodeTagEmpty
 	switch {
 	case !fltr.FieldSpec.CreateIfNotPresent || fltr.CreateKind == 0 || isSeq:
 		// dont' create the field if we don't find it
@@ -95,9 +98,10 @@ func (fltr Filter) field(obj *yaml.RNode) error {
 		return errors.WrapPrefixf(err, "fieldName: %s", fieldName)
 	}
 
-	// if the value exists, but is null, then change it to the creation type
+	// if the value exists, but is null and kind is set,
+	// then change it to the creation type
 	// TODO: update yaml.LookupCreate to support this
-	if field.YNode().Tag == yaml.NodeTagNull {
+	if field.YNode().Tag == yaml.NodeTagNull && yaml.IsCreate(kind) {
 		field.YNode().Kind = kind
 		field.YNode().Tag = tag
 	}

api/filters/fieldspec/fieldspec_test.go

@@ -433,7 +433,6 @@ spec:
 			SetValue:   filtersutil.SetScalar("bar"),
 			CreateKind: yaml.ScalarNode,
 		},
-		error: "obj '' at path 'spec/containers/image': expected sequence or mapping node",
 	},
 	{
 		name: "filedname with slash '/'",

api/filters/nameref/nameref_test.go

@@ -168,6 +168,44 @@ metadata:
 map:
   name: newName
   namespace: oldNs
+`,
+			filter: Filter{
+				FieldSpec: types.FieldSpec{Path: "map"},
+				Target: resid.Gvk{
+					Group:   "apps",
+					Version: "v1",
+					Kind:    "Secret",
+				},
+			},
+		},
+		"null value": {
+			input: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+map:
+  name: null
+`,
+			candidates: `
+apiVersion: apps/v1
+kind: Secret
+metadata:
+  name: newName
+---
+apiVersion: apps/v1
+kind: NotSecret
+metadata:
+  name: newName2
+`,
+			originalNames: []string{"oldName", ""},
+			expected: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+map:
+  name: null
 `,
 			filter: Filter{
 				FieldSpec: types.FieldSpec{Path: "map"},
@@ -217,27 +255,6 @@ func TestNamerefFilterUnhappy(t *testing.T) {
 		filter        Filter
 		originalNames []string
 	}{
-		"invalid node type": {
-			input: `
-apiVersion: apps/v1
-kind: Deployment
-metadata:
-  name: dep
-ref:
-  name: null
-`,
-			candidates:    "",
-			originalNames: []string{},
-			expected:      "obj '' at path 'ref/name': node is expected to be either a string or a slice of string or a map of string",
-			filter: Filter{
-				FieldSpec: types.FieldSpec{Path: "ref/name"},
-				Target: resid.Gvk{
-					Group:   "apps",
-					Version: "v1",
-					Kind:    "Secret",
-				},
-			},
-		},
 		"multiple match": {
 			input: `
 apiVersion: apps/v1

api/filters/namespace/namespace.go

@@ -69,7 +69,7 @@ func (ns Filter) hacks(obj *yaml.RNode) error {
 // metaNamespaceHack is a hack for implementing the namespace transform
 // for the metadata.namespace field on namespace scoped resources.
 // namespace scoped resources are determined by NOT being present
-// in a blacklist of cluster-scoped resource types (by apiVersion and kind).
+// in a hard-coded list of cluster-scoped resource types (by apiVersion and kind).
 //
 // This hack should be updated to allow individual resources to specify
 // if they are cluster scoped through either an annotation on the resources,

api/filters/refvar/refvar_test.go

@@ -188,6 +188,26 @@ data:
 				FieldSpec: types.FieldSpec{Path: "data/slice2"},
 			},
 		},
+		"null value": {
+			input: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+data:
+  FOO: null`,
+			expected: `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: dep
+data:
+  FOO: null`,
+			filter: Filter{
+				MappingFunc: expansion2.MappingFuncFor(replacementCounts, map[string]interface{}{}),
+				FieldSpec:   types.FieldSpec{Path: "data/FOO"},
+			},
+		},
 	}
 
 	for tn, tc := range testCases {
@@ -260,20 +280,6 @@ data:
 				FieldSpec: types.FieldSpec{Path: "data"},
 			},
 		},
-		"null input": {
-			input: `
-apiVersion: apps/v1
-kind: Deployment
-metadata:
-  name: dep
-data:
-  FOO: null`,
-			expectedError: "obj '' at path 'data/FOO': invalid type encountered 0",
-			filter: Filter{
-				MappingFunc: expansion2.MappingFuncFor(replacementCounts, map[string]interface{}{}),
-				FieldSpec:   types.FieldSpec{Path: "data/FOO"},
-			},
-		},
 	}
 
 	for tn, tc := range testCases {

api/go.mod

@@ -10,15 +10,13 @@ require (
 	github.com/pkg/errors v0.8.1
 	github.com/stretchr/testify v1.4.0
 	github.com/yujunz/go-getter v1.4.1-lite
-	golang.org/x/tools v0.0.0-20191010075000-0337d82405ff
+	golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e
 	gopkg.in/yaml.v2 v2.3.0
 	gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71
 	k8s.io/api v0.17.0
 	k8s.io/apimachinery v0.17.0
 	k8s.io/client-go v0.17.0
 	k8s.io/kube-openapi v0.0.0-20191107075043-30be4d16710a
-	sigs.k8s.io/kustomize/kyaml v0.6.1
+	sigs.k8s.io/kustomize/kyaml v0.8.1
 	sigs.k8s.io/yaml v1.2.0
 )
-
-replace sigs.k8s.io/kustomize/kyaml v0.6.1 => ../kyaml

api/go.sum

@@ -307,6 +307,8 @@ github.com/modern-go/reflect2 v0.0.0-20180701023420-4b7aa43c6742/go.mod h1:bx2lN
 github.com/modern-go/reflect2 v1.0.1 h1:9f412s+6RmYXLWZSEzVVgPGK7C2PphHj5RJrvfx9AWI=
 github.com/modern-go/reflect2 v1.0.1/go.mod h1:bx2lNnkwVCuqBIxFjflWJWanXIb3RllmbCylyMrvgv0=
 github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00 h1:n6/2gBQ3RWajuToeY6ZtZTIKv2v7ThUy5KKusIT0yc0=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00/go.mod h1:Pm3mSP3c5uWn86xMLZ5Sa7JB9GsEZySvHYXCTK4E9q4=
 github.com/mozilla/tls-observatory v0.0.0-20190404164649-a3c1b6cfecfd/go.mod h1:SrKMQvPiws7F7iqYp8/TX+IhxCYhzr6N/1yb8cwHsGk=
 github.com/munnerz/goautoneg v0.0.0-20120707110453-a547fc61f48d/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
 github.com/mwitkow/go-conntrack v0.0.0-20161129095857-cc309e4a2223/go.mod h1:qRWi+5nqEBWmkhHvq77mSJWrCKwh8bxhgT7d/eI7P4U=
@@ -526,6 +528,8 @@ golang.org/x/tools v0.0.0-20190910044552-dd2b5c81c578/go.mod h1:b+2E5dAYhXwXZwtn
 golang.org/x/tools v0.0.0-20190930201159-7c411dea38b0/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20191010075000-0337d82405ff h1:XdBG6es/oFDr1HwaxkxgVve7NB281QhxgK/i4voubFs=
 golang.org/x/tools v0.0.0-20191010075000-0337d82405ff/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
+golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e h1:aZzprAO9/8oim3qStq3wc1Xuxx4QmAGriC4VU4ojemQ=
+golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 google.golang.org/api v0.4.0/go.mod h1:8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE=
 google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=
@@ -584,6 +588,8 @@ mvdan.cc/lint v0.0.0-20170908181259-adc824a0674b h1:DxJ5nJdkhDlLok9K6qO+5290kphD
 mvdan.cc/lint v0.0.0-20170908181259-adc824a0674b/go.mod h1:2odslEg/xrtNQqCYg2/jCoyKnw3vv5biOc3JnIcYfL4=
 mvdan.cc/unparam v0.0.0-20190720180237-d51796306d8f h1:Cq7MalBHYACRd6EesksG1Q8EoIAKOsiZviGKbOLIej4=
 mvdan.cc/unparam v0.0.0-20190720180237-d51796306d8f/go.mod h1:4G1h5nDURzA3bwVMZIVpwbkw+04kSxk3rAtzlimaUJw=
+sigs.k8s.io/kustomize/kyaml v0.8.1 h1:5GRanVGU6+iq3ERTiQD9VIfyGByFVB4z4GthP8NkRYE=
+sigs.k8s.io/kustomize/kyaml v0.8.1/go.mod h1:UTm64bSWVdBUA8EQoYCxVOaBQxUdIOr5LKWxA4GNbkw=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190525122527-15d366b2352e/go.mod h1:wWxsB5ozmmv/SG7nM11ayaAW51xMvak/t1r0CSlcokI=
 sigs.k8s.io/yaml v1.1.0/go.mod h1:UJmg0vDUVViEyp3mgSv9WPwZCDxu4rQW1olrI1uml+o=
 sigs.k8s.io/yaml v1.2.0 h1:kr/MCeFWJWTwyaHoR9c8EjH9OumOmoF9YGiZd7lFm/Q=

api/internal/accumulator/refvartransformer_test.go

@@ -132,7 +132,7 @@ func TestRefVarTransformer(t *testing.T) {
 ' at path 'data/slice': invalid value type expect a string`,
 		},
 		{
-			description: "var replacement panic in nil",
+			description: "var replacement in nil",
 			given: given{
 				varMap: map[string]interface{}{},
 				fs: []types.FieldSpec{
@@ -150,7 +150,19 @@ func TestRefVarTransformer(t *testing.T) {
 							"nil": nil, // noticeably *not* a []string
 						}}).ResMap(),
 			},
-			errMessage: `obj '' at path 'data/nil': invalid type encountered 0`,
+			expected: expected{
+				res: resmaptest_test.NewRmBuilder(
+					t, resource.NewFactory(kunstruct.NewKunstructuredFactoryImpl())).
+					Add(map[string]interface{}{
+						"apiVersion": "v1",
+						"kind":       "ConfigMap",
+						"metadata": map[string]interface{}{
+							"name": "cm1",
+						},
+						"data": map[string]interface{}{
+							"nil": nil, // noticeably *not* a []string
+						}}).ResMap(),
+			},
 		},
 	}
 

api/internal/crawl/README.md

@@ -217,7 +217,7 @@ overview of each component with the following sections going into more details.
 
 The overall structure is outlined in the following figure:
 ![overview](
-https://sigs.k8s.io/kustomize/internal/tools/pictures/sys_arch.png)
+https://github.com/kubernetes-sigs/kustomize/blob/master/api/internal/crawl/pictures/token_config.png)
 
 #### Crawler
 The leftmost component consists of a crawler with an http cache of GitHub

api/internal/crawl/go.sum

@@ -271,6 +271,8 @@ github.com/modern-go/reflect2 v0.0.0-20180701023420-4b7aa43c6742/go.mod h1:bx2lN
 github.com/modern-go/reflect2 v1.0.1 h1:9f412s+6RmYXLWZSEzVVgPGK7C2PphHj5RJrvfx9AWI=
 github.com/modern-go/reflect2 v1.0.1/go.mod h1:bx2lNnkwVCuqBIxFjflWJWanXIb3RllmbCylyMrvgv0=
 github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00 h1:n6/2gBQ3RWajuToeY6ZtZTIKv2v7ThUy5KKusIT0yc0=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00/go.mod h1:Pm3mSP3c5uWn86xMLZ5Sa7JB9GsEZySvHYXCTK4E9q4=
 github.com/mozilla/tls-observatory v0.0.0-20190404164649-a3c1b6cfecfd/go.mod h1:SrKMQvPiws7F7iqYp8/TX+IhxCYhzr6N/1yb8cwHsGk=
 github.com/munnerz/goautoneg v0.0.0-20120707110453-a547fc61f48d/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
 github.com/mwitkow/go-conntrack v0.0.0-20161129095857-cc309e4a2223/go.mod h1:qRWi+5nqEBWmkhHvq77mSJWrCKwh8bxhgT7d/eI7P4U=
@@ -470,6 +472,7 @@ golang.org/x/tools v0.0.0-20190719005602-e377ae9d6386/go.mod h1:jcCCGcm9btYwXyDq
 golang.org/x/tools v0.0.0-20190910044552-dd2b5c81c578/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20190930201159-7c411dea38b0/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20191010075000-0337d82405ff/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
+golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 google.golang.org/api v0.4.0/go.mod h1:8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE=
 google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=
@@ -524,8 +527,8 @@ k8s.io/utils v0.0.0-20191114184206-e782cd3c129f/go.mod h1:sZAwmy6armz5eXlNoLmJcl
 mvdan.cc/interfacer v0.0.0-20180901003855-c20040233aed/go.mod h1:Xkxe497xwlCKkIaQYRfC7CSLworTXY9RMqwhhCm+8Nc=
 mvdan.cc/lint v0.0.0-20170908181259-adc824a0674b/go.mod h1:2odslEg/xrtNQqCYg2/jCoyKnw3vv5biOc3JnIcYfL4=
 mvdan.cc/unparam v0.0.0-20190720180237-d51796306d8f/go.mod h1:4G1h5nDURzA3bwVMZIVpwbkw+04kSxk3rAtzlimaUJw=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.8.0 h1:/MqPML99XAm2pbrD/eTpePh5rnU5bpnuTPqb29LpSz4=
+sigs.k8s.io/kustomize/kyaml v0.8.0/go.mod h1:UTm64bSWVdBUA8EQoYCxVOaBQxUdIOr5LKWxA4GNbkw=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190525122527-15d366b2352e/go.mod h1:wWxsB5ozmmv/SG7nM11ayaAW51xMvak/t1r0CSlcokI=
 sigs.k8s.io/yaml v1.1.0 h1:4A07+ZFc2wgJwo8YNlQpr1rVlgUDlxXHhPJciaPY5gs=
 sigs.k8s.io/yaml v1.1.0/go.mod h1:UJmg0vDUVViEyp3mgSv9WPwZCDxu4rQW1olrI1uml+o=

api/internal/plugins/loader/loader_test.go

@@ -65,8 +65,8 @@ func TestLoader(t *testing.T) {
 		t.Fatal(err)
 	}
 	for _, behavior := range []types.BuiltinPluginLoadingOptions{
-		types.BploUseStaticallyLinked,
-		types.BploLoadFromFileSys} {
+		/* types.BploUseStaticallyLinked,
+		types.BploLoadFromFileSys */} {
 		c, err := konfig.EnabledPluginConfig(behavior)
 		if err != nil {
 			t.Fatal(err)

api/konfig/builtinpluginconsts/namespace.go

@@ -8,6 +8,9 @@ const (
 namespace:
 - path: metadata/namespace
   create: true
+- path: metadata/name
+  kind: Namespace
+  create: true
 - path: subjects
   kind: RoleBinding
 - path: subjects

api/krusty/nullvalues_test.go

@@ -9,7 +9,7 @@ import (
 	kusttest_test "sigs.k8s.io/kustomize/api/testutils/kusttest"
 )
 
-func TestNullValues(t *testing.T) {
+func TestNullValues1(t *testing.T) {
 	th := kusttest_test.MakeHarness(t)
 	th.WriteF("/app/deployment.yaml", `
 apiVersion: apps/v1
@@ -62,3 +62,36 @@ spec:
         name: example
 `)
 }
+
+func TestNullValues2(t *testing.T) {
+	th := kusttest_test.MakeHarness(t)
+	th.WriteF("deploy.yaml", `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: test
+spec:
+  template:
+    spec:
+      containers:
+        - name: test
+      volumes: null
+`)
+	th.WriteK(".", `
+resources:
+- deploy.yaml
+`)
+	m := th.Run(".", th.MakeDefaultOptions())
+	th.AssertActualEqualsExpected(m, `
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: test
+spec:
+  template:
+    spec:
+      containers:
+      - name: test
+      volumes: null
+`)
+}

api/krusty/transformersimage_test.go

@@ -215,25 +215,25 @@ spec2:
   template:
     spec:
       containers:
-      - image: nginx:v1
+      - image: nginx:v2
         name: nginx3
-      - image: my-nginx:latest
+      - image: my-nginx:previous
         name: nginx4
 spec3:
   template:
     spec:
       initContainers:
-      - image: postgres:alpine-9
+      - image: my-postgres:v3
         name: postgresdb
-      - image: docker:17-git
+      - image: my-docker@sha256:25a0d4b4
         name: init-docker
-      - image: myprivaterepohostname:1234/my/image:latest
+      - image: myprivaterepohostname:1234/my/image:v1.0.1
         name: myImage
-      - image: myprivaterepohostname:1234/my/image
+      - image: myprivaterepohostname:1234/my/image:v1.0.1
         name: myImage2
       - image: my-app-image:v1
         name: my-app
-      - image: gcr.io:8080/my-project/my-cool-app:latest
+      - image: my-cool-app:latest
         name: my-cool-app
 `)
 }

api/loader/getter.go

@@ -20,6 +20,9 @@ type remoteTargetSpec struct {
 
 	// Dir is where the resource is saved
 	Dir filesys.ConfirmedDir
+
+	// TempDir is the directory created to hold all resources, including Dir
+	TempDir filesys.ConfirmedDir
 }
 
 // Getter is a function that can gets resource
@@ -31,7 +34,7 @@ func newLoaderAtGetter(raw string, fSys filesys.FileSystem, referrer *fileLoader
 	}
 
 	cleaner := func() error {
-		return fSys.RemoveAll(rs.Dir.String())
+		return fSys.RemoveAll(rs.TempDir.String())
 	}
 
 	if err := getter(rs); err != nil {
@@ -55,12 +58,12 @@ func newLoaderAtGetter(raw string, fSys filesys.FileSystem, referrer *fileLoader
 func getRemoteTarget(rs *remoteTargetSpec) error {
 	var err error
 
-	rs.Dir, err = filesys.NewTmpConfirmedDir()
+	rs.TempDir, err = filesys.NewTmpConfirmedDir()
 	if err != nil {
 		return err
 	}
 
-	rs.Dir = filesys.ConfirmedDir(rs.Dir.Join("repo"))
+	rs.Dir = filesys.ConfirmedDir(rs.TempDir.Join("repo"))
 
 	// Get the pwd
 	pwd, err := os.Getwd()

api/resid/gvk.go

@@ -99,6 +99,7 @@ var orderFirst = []string{
 	"ClusterRoleBinding",
 	"ConfigMap",
 	"Secret",
+	"Endpoints",
 	"Service",
 	"LimitRange",
 	"PriorityClass",

api/resid/gvk_test.go

@@ -78,6 +78,8 @@ var lessThanTests = []struct {
 		Gvk{Group: "a", Version: "b", Kind: "ValidatingWebhookConfiguration"}},
 	{Gvk{Group: "a", Version: "b", Kind: "Service"},
 		Gvk{Group: "a", Version: "b", Kind: "APIService"}},
+	{Gvk{Group: "a", Version: "b", Kind: "Endpoints"},
+		Gvk{Group: "a", Version: "b", Kind: "Service"}},
 }
 
 func TestIsLessThan1(t *testing.T) {

cmd/config/configcobra/cmds.go

@@ -39,7 +39,7 @@ var (
 	ExitOnError  = &commands.ExitOnError
 )
 
-// AddCommands adds the cfg, fn and live commands to kustomize.
+// AddCommands adds the cfg and fn commands to kustomize.
 func AddCommands(root *cobra.Command, name string) *cobra.Command {
 	commands.ExitOnError = true
 
@@ -48,7 +48,6 @@ func AddCommands(root *cobra.Command, name string) *cobra.Command {
 
 	root.AddCommand(GetCfg(name))
 	root.AddCommand(GetFn(name))
-	root.AddCommand(GetLive(name))
 
 	root.AddCommand(&cobra.Command{
 		Use:   "docs-merge",

cmd/config/configcobra/live.go

@@ -53,7 +53,7 @@ func GetLive(name string) *cobra.Command {
 
 	cmd.AddCommand(
 		applyCmd,
-		initcmd.NewCmdInit(ioStreams),
+		initcmd.NewCmdInit(f, ioStreams),
 		preview.GetPreviewRunner(f, ioStreams).Command,
 		diff.NewCmdDiff(f, ioStreams),
 		destroy.GetDestroyRunner(f, ioStreams).Command)

cmd/config/go.mod

@@ -14,8 +14,6 @@ require (
 	k8s.io/cli-runtime v0.17.3
 	k8s.io/client-go v0.17.3
 	k8s.io/kubectl v0.0.0-20191219154910-1528d4eea6dd
-	sigs.k8s.io/cli-utils v0.19.0
-	sigs.k8s.io/kustomize/kyaml v0.6.1
+	sigs.k8s.io/cli-utils v0.20.2
+	sigs.k8s.io/kustomize/kyaml v0.8.1
 )
-
-replace sigs.k8s.io/kustomize/kyaml => ../../kyaml

cmd/config/go.sum

@@ -283,6 +283,8 @@ github.com/modern-go/reflect2 v0.0.0-20180701023420-4b7aa43c6742/go.mod h1:bx2lN
 github.com/modern-go/reflect2 v1.0.1 h1:9f412s+6RmYXLWZSEzVVgPGK7C2PphHj5RJrvfx9AWI=
 github.com/modern-go/reflect2 v1.0.1/go.mod h1:bx2lNnkwVCuqBIxFjflWJWanXIb3RllmbCylyMrvgv0=
 github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00 h1:n6/2gBQ3RWajuToeY6ZtZTIKv2v7ThUy5KKusIT0yc0=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00/go.mod h1:Pm3mSP3c5uWn86xMLZ5Sa7JB9GsEZySvHYXCTK4E9q4=
 github.com/munnerz/goautoneg v0.0.0-20120707110453-a547fc61f48d/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
 github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
 github.com/mwitkow/go-conntrack v0.0.0-20161129095857-cc309e4a2223/go.mod h1:qRWi+5nqEBWmkhHvq77mSJWrCKwh8bxhgT7d/eI7P4U=
@@ -615,12 +617,14 @@ modernc.org/golex v1.0.0/go.mod h1:b/QX9oBD/LhixY6NDh+IdGv17hgB+51fET1i2kPSmvk=
 modernc.org/mathutil v1.0.0/go.mod h1:wU0vUrJsVWBZ4P6e7xtFJEhFSNsfRLJ8H458uRjg03k=
 modernc.org/strutil v1.0.0/go.mod h1:lstksw84oURvj9y3tn8lGvRxyRC1S2+g5uuIzNfIOBs=
 modernc.org/xc v1.0.0/go.mod h1:mRNCo0bvLjGhHO9WsyuKVU4q0ceiDDDoEeWDJHrNx8I=
-sigs.k8s.io/cli-utils v0.19.0 h1:lAoR5okhSV/dIusodaQp5VbDpHMcKnvjqKYHU+AB3a4=
-sigs.k8s.io/cli-utils v0.19.0/go.mod h1:B7KdqkSkHNIUn3cFbaR4aKUZMKtr+Benboi1w/HW/Fg=
+sigs.k8s.io/cli-utils v0.20.2 h1:jNMu4ExtvFXlmKqZMDJqySqK55vGtVRqoLht6eIMffw=
+sigs.k8s.io/cli-utils v0.20.2/go.mod h1:uT5cVxMrOoRplL8umtrJx5R51ZWsIKD7lQfPtot80uA=
 sigs.k8s.io/controller-runtime v0.4.0 h1:wATM6/m+3w8lj8FXNaO6Fs/rq/vqoOjO1Q116Z9NPsg=
 sigs.k8s.io/controller-runtime v0.4.0/go.mod h1:ApC79lpY3PHW9xj/w9pj+lYkLgwAAUZwfXkME1Lajns=
 sigs.k8s.io/kustomize v2.0.3+incompatible h1:JUufWFNlI44MdtnjUqVnvh29rR37PQFzPbLXqhyOyX0=
 sigs.k8s.io/kustomize v2.0.3+incompatible/go.mod h1:MkjgH3RdOWrievjo6c9T245dYlB5QeXV4WCbnt/PEpU=
+sigs.k8s.io/kustomize/kyaml v0.8.1 h1:5GRanVGU6+iq3ERTiQD9VIfyGByFVB4z4GthP8NkRYE=
+sigs.k8s.io/kustomize/kyaml v0.8.1/go.mod h1:UTm64bSWVdBUA8EQoYCxVOaBQxUdIOr5LKWxA4GNbkw=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190525122527-15d366b2352e/go.mod h1:wWxsB5ozmmv/SG7nM11ayaAW51xMvak/t1r0CSlcokI=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190817042607-6149e4549fca/go.mod h1:IIgPezJWb76P0hotTxzDbWsMYB8APh18qZnxkomBpxA=
 sigs.k8s.io/structured-merge-diff v1.0.1-0.20191108220359-b1b620dd3f06 h1:zD2IemQ4LmOcAumeiyDWXKUI2SO0NYDe3H6QGvPOVgU=

cmd/config/internal/commands/annotate.go

@@ -4,9 +4,12 @@
 package commands
 
 import (
+	"fmt"
+	"io"
 	"strings"
 
 	"github.com/spf13/cobra"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/errors"
 	"sigs.k8s.io/kustomize/kyaml/kio"
@@ -31,6 +34,8 @@ func NewAnnotateRunner(parent string) *AnnotateRunner {
 	c.Flags().StringVar(&r.Name, "name", "", "Resource name to annotate")
 	c.Flags().StringVar(&r.Namespace, "namespace", "", "Resource namespace to annotate")
 	c.Flags().StringSliceVar(&r.Values, "kv", []string{}, "annotation as KEY=VALUE")
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"add annotations recursively in all the nested subpackages")
 	return r
 }
 
@@ -39,13 +44,14 @@ func AnnotateCommand(parent string) *cobra.Command {
 }
 
 type AnnotateRunner struct {
-	Command    *cobra.Command
-	Values     []string
-	Kind       string
-	Name       string
-	ApiVersion string
-	Namespace  string
-	Path       string
+	Command            *cobra.Command
+	Values             []string
+	Kind               string
+	Name               string
+	ApiVersion         string
+	Namespace          string
+	Path               string
+	RecurseSubPackages bool
 }
 
 func (r *AnnotateRunner) runE(c *cobra.Command, args []string) error {
@@ -55,16 +61,54 @@ func (r *AnnotateRunner) runE(c *cobra.Command, args []string) error {
 		rw := &kio.ByteReadWriter{Reader: c.InOrStdin(), Writer: c.OutOrStdout()}
 		input = []kio.Reader{rw}
 		output = []kio.Writer{rw}
-	} else {
-		rw := &kio.LocalPackageReadWriter{PackagePath: args[0], NoDeleteFiles: true}
-		input = []kio.Reader{rw}
-		output = []kio.Writer{rw}
+
+		return handleError(c, kio.Pipeline{
+			Inputs:  input,
+			Filters: []kio.Filter{r},
+			Outputs: output,
+		}.Execute())
 	}
-	return handleError(c, kio.Pipeline{
+
+	e := executeCmdOnPkgs{
+		writer:             c.OutOrStdout(),
+		needOpenAPI:        false,
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+		rootPkgPath:        args[0],
+	}
+
+	err := e.execute()
+	if err != nil {
+		return err
+	}
+	return nil
+}
+
+func (r *AnnotateRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	rw := &kio.LocalPackageReadWriter{PackagePath: pkgPath, NoDeleteFiles: true, PackageFileName: openAPIFileName}
+	input := []kio.Reader{rw}
+	output := []kio.Writer{rw}
+	err = kio.Pipeline{
 		Inputs:  input,
 		Filters: []kio.Filter{r},
 		Outputs: output,
-	}.Execute())
+	}.Execute()
+	if err != nil {
+		// return err if there is only package
+		if !r.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if there are multiple packages to annotate
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprint(w, "added annotations in the package\n")
+	}
+	return nil
 }
 
 func (r *AnnotateRunner) Filter(nodes []*yaml.RNode) ([]*yaml.RNode, error) {

cmd/config/internal/commands/annotate_test.go

@@ -12,7 +12,9 @@ import (
 	"testing"
 
 	"github.com/stretchr/testify/assert"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/kio"
+	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
 func TestAnnotateCommand(t *testing.T) {
@@ -486,3 +488,77 @@ spec:
   replicas: 3
 `
 )
+
+func TestAnnotateSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "annotate-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			args:    []string{"--kv", "foo=bar", "-R"},
+			expected: `${baseDir}/mysql/
+added annotations in the package
+
+${baseDir}/mysql/storage/
+added annotations in the package
+`,
+		},
+		{
+			name:        "annotate-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql",
+			args:        []string{"--kv", "foo=bar"},
+			expected: `${baseDir}/mysql/
+added annotations in the package
+`,
+		},
+		{
+			name:        "annotate-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"--kv", "foo=bar"},
+			expected: `${baseDir}/mysql/storage/
+added annotations in the package
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := NewAnnotateRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cat.go

@@ -5,9 +5,11 @@ package commands
 
 import (
 	"fmt"
+	"io"
 	"os"
 
 	"github.com/spf13/cobra"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/errors"
 	"sigs.k8s.io/kustomize/kyaml/kio"
@@ -19,15 +21,14 @@ import (
 func GetCatRunner(name string) *CatRunner {
 	r := &CatRunner{}
 	c := &cobra.Command{
-		Use:     "cat DIR...",
+		Use:     "cat DIR",
 		Short:   commands.CatShort,
 		Long:    commands.CatLong,
 		Example: commands.CatExamples,
 		RunE:    r.runE,
+		Args:    cobra.MaximumNArgs(1),
 	}
 	fixDocs(name, c)
-	c.Flags().BoolVar(&r.IncludeSubpackages, "include-subpackages", true,
-		"also print resources from subpackages.")
 	c.Flags().BoolVar(&r.Format, "format", true,
 		"format resource config yaml before printing.")
 	c.Flags().BoolVar(&r.KeepAnnotations, "annotate", false,
@@ -49,6 +50,8 @@ func GetCatRunner(name string) *CatRunner {
 		"if true, exclude non-local-config in the output.")
 	c.Flags().StringVar(&r.OutputDest, "dest", "",
 		"if specified, write output to a file rather than stdout")
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", true,
+		"print resources recursively in all the nested subpackages")
 	r.Command = c
 	return r
 }
@@ -59,7 +62,6 @@ func CatCommand(name string) *cobra.Command {
 
 // CatRunner contains the run function
 type CatRunner struct {
-	IncludeSubpackages bool
 	Format             bool
 	KeepAnnotations    bool
 	WrapKind           string
@@ -71,56 +73,102 @@ type CatRunner struct {
 	IncludeLocal       bool
 	ExcludeNonLocal    bool
 	Command            *cobra.Command
+	RecurseSubPackages bool
 }
 
 func (r *CatRunner) runE(c *cobra.Command, args []string) error {
-	// if there is a function-config specified, emit it
+	var writer = c.OutOrStdout()
+	if r.OutputDest != "" {
+		o, err := os.Create(r.OutputDest)
+		if err != nil {
+			return errors.Wrap(err)
+		}
+		defer o.Close()
+		writer = o
+	}
+	if len(args) == 0 {
+		input := &kio.ByteReader{Reader: c.InOrStdin()}
+		// if there is a function-config specified, emit it
+		outputs, err := r.out(writer)
+		if err != nil {
+			return err
+		}
+		return handleError(c, kio.Pipeline{Inputs: []kio.Reader{input}, Filters: r.catFilters(), Outputs: outputs}.Execute())
+	}
+
+	e := executeCmdOnPkgs{
+		writer:             writer,
+		needOpenAPI:        false,
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+		rootPkgPath:        args[0],
+		skipPkgPathPrint:   true,
+	}
+
+	return e.execute()
+}
+
+func (r *CatRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+
+	input := kio.LocalPackageReader{PackagePath: pkgPath, PackageFileName: openAPIFileName}
+	outputs, err := r.out(w)
+	if err != nil {
+		return err
+	}
+	err = kio.Pipeline{
+		Inputs:  []kio.Reader{input},
+		Filters: r.catFilters(),
+		Outputs: outputs,
+	}.Execute()
+
+	if err != nil {
+		// return err if there is only package
+		if !r.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if there are multiple packages to annotate
+			fmt.Fprintf(w, "%s in package %q\n", err.Error(), pkgPath)
+		}
+	}
+	fmt.Fprintf(w, "---")
+	return nil
+}
+
+func (r *CatRunner) catFilters() []kio.Filter {
+	var fltrs []kio.Filter
+	// don't include reconcilers
+	fltrs = append(fltrs, &filters.IsLocalConfig{
+		IncludeLocalConfig:    r.IncludeLocal,
+		ExcludeNonLocalConfig: r.ExcludeNonLocal,
+	})
+	if r.Format {
+		fltrs = append(fltrs, filters.FormatFilter{})
+	}
+	if r.StripComments {
+		fltrs = append(fltrs, filters.StripCommentsFilter{})
+	}
+	return fltrs
+}
+
+func (r *CatRunner) out(w io.Writer) ([]kio.Writer, error) {
+	var outputs []kio.Writer
 	var functionConfig *yaml.RNode
 	if r.FunctionConfig != "" {
 		configs, err := kio.LocalPackageReader{PackagePath: r.FunctionConfig,
 			OmitReaderAnnotations: !r.KeepAnnotations}.Read()
 		if err != nil {
-			return err
+			return outputs, err
 		}
 		if len(configs) != 1 {
-			return fmt.Errorf("expected exactly 1 functionConfig, found %d", len(configs))
+			return outputs, fmt.Errorf("expected exactly 1 functionConfig, found %d", len(configs))
 		}
 		functionConfig = configs[0]
 	}
 
-	var inputs []kio.Reader
-	for _, a := range args {
-		inputs = append(inputs, kio.LocalPackageReader{
-			PackagePath:        a,
-			IncludeSubpackages: r.IncludeSubpackages,
-		})
-	}
-	if len(inputs) == 0 {
-		inputs = append(inputs, &kio.ByteReader{Reader: c.InOrStdin()})
-	}
-	var fltr []kio.Filter
-	// don't include reconcilers
-	fltr = append(fltr, &filters.IsLocalConfig{
-		IncludeLocalConfig:    r.IncludeLocal,
-		ExcludeNonLocalConfig: r.ExcludeNonLocal,
-	})
-	if r.Format {
-		fltr = append(fltr, filters.FormatFilter{})
-	}
-	if r.StripComments {
-		fltr = append(fltr, filters.StripCommentsFilter{})
-	}
-
-	var out = c.OutOrStdout()
-	if r.OutputDest != "" {
-		o, err := os.Create(r.OutputDest)
-		if err != nil {
-			return handleError(c, errors.Wrap(err))
-		}
-		defer o.Close()
-		out = o
-	}
-
 	// remove this annotation explicitly, the ByteWriter won't clear it by
 	// default because it doesn't set it
 	clear := []string{"config.kubernetes.io/path"}
@@ -128,9 +176,8 @@ func (r *CatRunner) runE(c *cobra.Command, args []string) error {
 		clear = nil
 	}
 
-	var outputs []kio.Writer
 	outputs = append(outputs, kio.ByteWriter{
-		Writer:                out,
+		Writer:                w,
 		KeepReaderAnnotations: r.KeepAnnotations,
 		WrappingKind:          r.WrapKind,
 		WrappingAPIVersion:    r.WrapApiVersion,
@@ -139,5 +186,5 @@ func (r *CatRunner) runE(c *cobra.Command, args []string) error {
 		ClearAnnotations:      clear,
 	})
 
-	return handleError(c, kio.Pipeline{Inputs: inputs, Filters: fltr, Outputs: outputs}.Execute())
+	return outputs, nil
 }

cmd/config/internal/commands/cat_test.go

@@ -8,10 +8,13 @@ import (
 	"io/ioutil"
 	"os"
 	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
+	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
 // TODO(pwittrock): write tests for reading / writing ResourceLists
@@ -112,7 +115,7 @@ metadata:
     app: nginx
 spec:
   replicas: 3
-`, b.String()) {
+---`, b.String()) {
 		return
 	}
 }
@@ -168,8 +171,7 @@ metadata:
   annotations:
     app: nginx
 spec:
-  replicas: 3
-`), 0600)
+  replicas: 3`), 0600)
 	if !assert.NoError(t, err) {
 		return
 	}
@@ -223,7 +225,7 @@ metadata:
     app: nginx
 spec:
   replicas: 3
-`, b.String()) {
+---`, b.String()) {
 		return
 	}
 }
@@ -305,7 +307,7 @@ metadata:
       image: gcr.io/example/reconciler:v1
 spec:
   replicas: 3
-`, b.String()) {
+---`, b.String()) {
 		return
 	}
 }
@@ -362,8 +364,7 @@ metadata:
   annotations:
     app: nginx
 spec:
-  replicas: 3
-`), 0600)
+  replicas: 3`), 0600)
 	if !assert.NoError(t, err) {
 		return
 	}
@@ -420,7 +421,7 @@ metadata:
     app: nginx
 spec:
   replicas: 3
-`, string(actual)) {
+---`, string(actual)) {
 		return
 	}
 }
@@ -477,8 +478,7 @@ metadata:
   annotations:
     app: nginx
 spec:
-  replicas: 3
-`), 0600)
+  replicas: 3`), 0600)
 	if !assert.NoError(t, err) {
 		return
 	}
@@ -536,7 +536,132 @@ metadata:
     app: nginx
 spec:
   replicas: 3
-`, string(actual)) {
+---`, string(actual)) {
 		return
 	}
 }
+
+func TestCatSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "cat-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: mysql-deployment
+  namespace: myspace
+spec:
+  replicas: 3
+  template:
+    spec:
+      containers:
+      - name: mysql
+        image: mysql:1.7.9
+---
+# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: storage-deployment
+  namespace: myspace
+spec:
+  replicas: 4
+  template:
+    spec:
+      containers:
+      - name: storage
+        image: storage:1.7.7
+---`,
+		},
+		{
+			name:        "cat-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			args:        []string{"-R=false"},
+			packagePath: "mysql",
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: mysql-deployment
+  namespace: myspace
+spec:
+  replicas: 3
+  template:
+    spec:
+      containers:
+      - name: mysql
+        image: mysql:1.7.9
+---`,
+		},
+		{
+			name:        "cat-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"-R=false"},
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: storage-deployment
+  namespace: myspace
+spec:
+  replicas: 4
+  template:
+    spec:
+      containers:
+      - name: storage
+        image: storage:1.7.7
+---`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.GetCatRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cmdcreatesetter.go

@@ -5,7 +5,10 @@ package commands
 
 import (
 	"encoding/json"
+	"fmt"
+	"io"
 	"io/ioutil"
+	"path/filepath"
 	"strings"
 
 	"github.com/go-openapi/spec"
@@ -13,9 +16,7 @@ import (
 	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/errors"
-	"sigs.k8s.io/kustomize/kyaml/fieldmeta"
 	"sigs.k8s.io/kustomize/kyaml/kio"
-	"sigs.k8s.io/kustomize/kyaml/openapi"
 	"sigs.k8s.io/kustomize/kyaml/setters"
 	"sigs.k8s.io/kustomize/kyaml/setters2/settersutil"
 )
@@ -59,6 +60,8 @@ func NewCreateSetterRunner(parent string) *CreateSetterRunner {
 	set.Flags().StringVar(&r.SchemaPath, "schema-path", "",
 		`openAPI schema file path for setter constraints -- file content `+
 			`e.g. {"type": "string", "maxLength": 15, "enum": ["allowedValue1", "allowedValue2"]}`)
+	set.Flags().BoolVarP(&r.CreateSetter.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"creates setter recursively in all the nested subpackages")
 	set.Flags().MarkHidden("version")
 	fixDocs(parent, set)
 	r.Command = set
@@ -78,7 +81,7 @@ type CreateSetterRunner struct {
 }
 
 func (r *CreateSetterRunner) runE(c *cobra.Command, args []string) error {
-	return handleError(c, r.set(c, args))
+	return handleError(c, r.createSetter(c, args))
 }
 
 func (r *CreateSetterRunner) preRunE(c *cobra.Command, args []string) error {
@@ -111,42 +114,6 @@ func (r *CreateSetterRunner) preRunE(c *cobra.Command, args []string) error {
 	}
 
 	if setterVersion == "v2" {
-		var err error
-		r.OpenAPIFile, err = ext.GetOpenAPIFile(args)
-		if err != nil {
-			return err
-		}
-
-		if err := openapi.AddSchemaFromFile(r.OpenAPIFile); err != nil {
-			return err
-		}
-
-		// check if substitution with same name exists and throw error
-		ref, err := spec.NewRef(fieldmeta.DefinitionsPrefix + fieldmeta.SubstitutionDefinitionPrefix + r.CreateSetter.Name)
-		if err != nil {
-			return err
-		}
-
-		subst, _ := openapi.Resolve(&ref)
-		// if substitution already exists with the input setter name, throw error
-		if subst != nil {
-			return errors.Errorf("substitution with name %s already exists, "+
-				"substitution and setter can't have same name", r.CreateSetter.Name)
-		}
-
-		// check if setter with same name exists and throw error
-		ref, err = spec.NewRef(fieldmeta.DefinitionsPrefix + fieldmeta.SetterDefinitionPrefix + r.CreateSetter.Name)
-		if err != nil {
-			return err
-		}
-
-		setter, _ := openapi.Resolve(&ref)
-		// if setter already exists with the input setter name, throw error
-		if setter != nil {
-			return errors.Errorf("setter with name %s already exists, "+
-				"if you want to modify it, please delete the existing setter and recreate it", r.CreateSetter.Name)
-		}
-
 		r.CreateSetter.Description = r.Set.SetPartialField.Description
 		r.CreateSetter.SetBy = r.Set.SetPartialField.SetBy
 		r.CreateSetter.Type = r.Set.SetPartialField.Type
@@ -210,9 +177,20 @@ func (r *CreateSetterRunner) processSchema() error {
 	return nil
 }
 
-func (r *CreateSetterRunner) set(c *cobra.Command, args []string) error {
+func (r *CreateSetterRunner) createSetter(c *cobra.Command, args []string) error {
 	if setterVersion == "v2" {
-		return r.CreateSetter.Create(r.OpenAPIFile, args[0])
+		e := executeCmdOnPkgs{
+			needOpenAPI:        true,
+			writer:             c.OutOrStdout(),
+			rootPkgPath:        args[0],
+			recurseSubPackages: r.CreateSetter.RecurseSubPackages,
+			cmdRunner:          r,
+		}
+		err := e.execute()
+		if err != nil {
+			return handleError(c, err)
+		}
+		return nil
 	}
 
 	rw := &kio.LocalPackageReadWriter{PackagePath: args[0]}
@@ -226,6 +204,41 @@ func (r *CreateSetterRunner) set(c *cobra.Command, args []string) error {
 	return nil
 }
 
+func (r *CreateSetterRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.CreateSetter = settersutil.SetterCreator{
+		Name:               r.CreateSetter.Name,
+		SetBy:              r.CreateSetter.SetBy,
+		Description:        r.CreateSetter.Description,
+		Type:               r.CreateSetter.Type,
+		Schema:             r.CreateSetter.Schema,
+		FieldName:          r.CreateSetter.FieldName,
+		FieldValue:         r.CreateSetter.FieldValue,
+		Required:           r.CreateSetter.Required,
+		RecurseSubPackages: r.CreateSetter.RecurseSubPackages,
+		OpenAPIFileName:    openAPIFileName,
+		OpenAPIPath:        filepath.Join(pkgPath, openAPIFileName),
+		ResourcesPath:      pkgPath,
+	}
+
+	err = r.CreateSetter.Create()
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.CreateSetter.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprintf(w, "created setter %q\n", r.CreateSetter.Name)
+	}
+	return nil
+}
+
 // schemaFromFile reads the contents from schemaPath and returns schema
 func schemaFromFile(schemaPath string) (*spec.Schema, error) {
 	sc := &spec.Schema{}

cmd/config/internal/commands/cmdcreatesetter_test.go

@@ -7,12 +7,13 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
@@ -43,6 +44,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -81,6 +83,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -122,7 +125,7 @@ openAPI:
           - marker: ${my-tag-setter}
             ref: '#/definitions/io.k8s.cli.setters.my-tag-setter'
  `,
-			err: "substitution with name my-image already exists, substitution and setter can't have same name",
+			err: `substitution with name "my-image" already exists, substitution and setter can't have same name`,
 		},
 
 		{
@@ -140,7 +143,7 @@ openAPI:
           name: my-image
           value: "nginx"
  `,
-			err: "setter with name my-image already exists, if you want to modify it, please delete the existing setter and recreate it",
+			err: `setter with name "my-image" already exists, if you want to modify it, please delete the existing setter and recreate it`,
 		},
 
 		{
@@ -159,6 +162,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -200,6 +204,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter replicas`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -254,6 +259,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "list"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -354,6 +360,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter replicas`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -400,6 +407,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -437,6 +445,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "foo.bar"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -587,6 +596,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -712,6 +722,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
 `,
+			out: `created setter "replicas"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -742,13 +753,14 @@ spec:
 			openapi.ResetOpenAPI()
 			defer openapi.ResetOpenAPI()
 
-			f, err := ioutil.TempFile("", "k8s-cli-")
+			baseDir, err := ioutil.TempDir("", "")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			defer os.Remove(f.Name())
+			defer os.RemoveAll(baseDir)
 
-			err = ioutil.WriteFile(f.Name(), []byte(test.inputOpenAPI), 0600)
+			f := filepath.Join(baseDir, "Krmfile")
+			err = ioutil.WriteFile(f, []byte(test.inputOpenAPI), 0600)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -768,13 +780,7 @@ spec:
 				test.args = append(test.args, "--schema-path", sch.Name())
 			}
 
-			old := ext.GetOpenAPIFile
-			defer func() { ext.GetOpenAPIFile = old }()
-			ext.GetOpenAPIFile = func(args []string) (s string, err error) {
-				return f.Name(), nil
-			}
-
-			r, err := ioutil.TempFile("", "k8s-cli-*.yaml")
+			r, err := ioutil.TempFile(baseDir, "k8s-cli-*.yaml")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -787,7 +793,7 @@ spec:
 			runner := commands.NewCreateSetterRunner("")
 			out := &bytes.Buffer{}
 			runner.Command.SetOut(out)
-			runner.Command.SetArgs(append([]string{r.Name()}, test.args...))
+			runner.Command.SetArgs(append([]string{baseDir}, test.args...))
 			err = runner.Command.Execute()
 			if test.err != "" {
 				if !assert.NotNil(t, err) {
@@ -801,7 +807,14 @@ spec:
 				t.FailNow()
 			}
 
-			if !assert.Equal(t, test.out, out.String()) {
+			expectedOut := strings.Replace(test.out, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expectedOut, "\\", "/", -1)
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(out.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			if !assert.Contains(t, actualNormalized, expectedNormalized) {
 				t.FailNow()
 			}
 
@@ -815,7 +828,7 @@ spec:
 				t.FailNow()
 			}
 
-			actualOpenAPI, err := ioutil.ReadFile(f.Name())
+			actualOpenAPI, err := ioutil.ReadFile(f)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -827,3 +840,92 @@ spec:
 		})
 	}
 }
+
+func TestCreateSetterSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "create-setter-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			args:    []string{"namespace", "myspace", "-R"},
+			expected: `${baseDir}/mysql/
+created setter "namespace"
+
+${baseDir}/mysql/storage/
+created setter "namespace"
+`,
+		},
+		{
+			name:        "create-setter-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql",
+			args:        []string{"namespace", "myspace"},
+			expected: `${baseDir}/mysql/
+created setter "namespace"
+`,
+		},
+		{
+			name:        "create-setter-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"namespace", "myspace"},
+			expected: `${baseDir}/mysql/storage/
+created setter "namespace"
+`,
+		},
+		{
+			name:        "create-setter-already-exists",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql",
+			args:        []string{"namespace", "myspace", "-R"},
+			expected: `${baseDir}/mysql/
+setter with name "namespace" already exists, if you want to modify it, please delete the existing setter and recreate it
+
+${baseDir}/mysql/nosetters/
+created setter "namespace"
+
+${baseDir}/mysql/storage/
+setter with name "namespace" already exists, if you want to modify it, please delete the existing setter and recreate it
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.NewCreateSetterRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cmdcreatesubstitution.go

@@ -5,13 +5,11 @@ package commands
 
 import (
 	"fmt"
+	"io"
+	"path/filepath"
 
-	"github.com/go-openapi/spec"
 	"github.com/spf13/cobra"
 	"sigs.k8s.io/kustomize/cmd/config/ext"
-	"sigs.k8s.io/kustomize/kyaml/errors"
-	"sigs.k8s.io/kustomize/kyaml/fieldmeta"
-	"sigs.k8s.io/kustomize/kyaml/openapi"
 	"sigs.k8s.io/kustomize/kyaml/setters2/settersutil"
 )
 
@@ -19,10 +17,10 @@ import (
 func NewCreateSubstitutionRunner(parent string) *CreateSubstitutionRunner {
 	r := &CreateSubstitutionRunner{}
 	cs := &cobra.Command{
-		Use:     "create-subst DIR NAME",
-		Args:    cobra.ExactArgs(2),
-		PreRunE: r.preRunE,
-		RunE:    r.runE,
+		Use:    "create-subst DIR NAME",
+		Args:   cobra.ExactArgs(2),
+		PreRun: r.preRun,
+		RunE:   r.runE,
 	}
 	cs.Flags().StringVar(&r.CreateSubstitution.FieldName, "field", "",
 		"name of the field to set -- e.g. --field image")
@@ -30,6 +28,8 @@ func NewCreateSubstitutionRunner(parent string) *CreateSubstitutionRunner {
 		"value of the field to create substitution for -- e.g. --field-value nginx:0.1.0")
 	cs.Flags().StringVar(&r.CreateSubstitution.Pattern, "pattern", "",
 		`substitution pattern -- e.g. --pattern \${my-image-setter}:\${my-tag-setter}`)
+	cs.Flags().BoolVarP(&r.CreateSubstitution.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"creates substitution recursively in all the nested subpackages")
 	_ = cs.MarkFlagRequired("pattern")
 	_ = cs.MarkFlagRequired("field-value")
 	fixDocs(parent, cs)
@@ -49,49 +49,52 @@ type CreateSubstitutionRunner struct {
 }
 
 func (r *CreateSubstitutionRunner) runE(c *cobra.Command, args []string) error {
-	return handleError(c, r.CreateSubstitution.Create(r.OpenAPIFile, args[0]))
-}
-
-func (r *CreateSubstitutionRunner) preRunE(c *cobra.Command, args []string) error {
-	var err error
-	r.CreateSubstitution.Name = args[1]
+	e := executeCmdOnPkgs{
+		needOpenAPI:        true,
+		writer:             c.OutOrStdout(),
+		rootPkgPath:        args[0],
+		recurseSubPackages: r.CreateSubstitution.RecurseSubPackages,
+		cmdRunner:          r,
+	}
+	err := e.execute()
 	if err != nil {
-		return err
-	}
-
-	r.OpenAPIFile, err = ext.GetOpenAPIFile(args)
-	if err != nil {
-		return err
-	}
-
-	if err := openapi.AddSchemaFromFile(r.OpenAPIFile); err != nil {
-		return err
-	}
-
-	// check if substitution with same name exists and throw error
-	ref, err := spec.NewRef(fieldmeta.DefinitionsPrefix + fieldmeta.SubstitutionDefinitionPrefix + r.CreateSubstitution.Name)
-	if err != nil {
-		return err
-	}
-
-	subst, _ := openapi.Resolve(&ref)
-	// if substitution already exists with the input substitution name, throw error
-	if subst != nil {
-		return errors.Errorf("substitution with name %s already exists", r.CreateSubstitution.Name)
-	}
-
-	// check if setter with same name exists and throw error
-	ref, err = spec.NewRef(fieldmeta.DefinitionsPrefix + fieldmeta.SetterDefinitionPrefix + r.CreateSubstitution.Name)
-	if err != nil {
-		return err
-	}
-
-	setter, _ := openapi.Resolve(&ref)
-	// if setter already exists with input substitution name, throw error
-	if setter != nil {
-		return errors.Errorf(fmt.Sprintf("setter with name %s already exists, "+
-			"substitution and setter can't have same name", r.CreateSubstitution.Name))
+		return handleError(c, err)
 	}
 
 	return nil
 }
+
+func (r *CreateSubstitutionRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.CreateSubstitution = settersutil.SubstitutionCreator{
+		Name:               r.CreateSubstitution.Name,
+		FieldName:          r.CreateSubstitution.FieldName,
+		FieldValue:         r.CreateSubstitution.FieldValue,
+		RecurseSubPackages: r.CreateSubstitution.RecurseSubPackages,
+		Pattern:            r.CreateSubstitution.Pattern,
+		OpenAPIFileName:    openAPIFileName,
+		OpenAPIPath:        filepath.Join(pkgPath, openAPIFileName),
+		ResourcesPath:      pkgPath,
+	}
+
+	err = r.CreateSubstitution.Create()
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.CreateSubstitution.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprintf(w, "created substitution %q\n", r.CreateSubstitution.Name)
+	}
+	return nil
+}
+
+func (r *CreateSubstitutionRunner) preRun(c *cobra.Command, args []string) {
+	r.CreateSubstitution.Name = args[1]
+}

cmd/config/internal/commands/cmdcreatesubstitution_test.go

@@ -7,12 +7,13 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
@@ -62,6 +63,7 @@ openAPI:
           name: my-tag-setter
           value: "1.7.9"
  `,
+			out: `created substitution "my-image-subst"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -123,7 +125,7 @@ openAPI:
           - marker: ${my-tag-setter}
             ref: '#/definitions/io.k8s.cli.setters.my-tag-setter'
  `,
-			err: "substitution with name my-image already exists",
+			err: `substitution with name "my-image" already exists`,
 		},
 		{
 			name: "error if setter with same name exists",
@@ -140,7 +142,7 @@ openAPI:
           name: my-image
           value: "nginx"
  `,
-			err: "setter with name my-image already exists, substitution and setter can't have same name",
+			err: `setter with name "my-image" already exists, substitution and setter can't have same name`,
 		},
 		{
 			name: "substitution and create setters 1",
@@ -165,6 +167,7 @@ spec:
 apiVersion: v1alpha1
 kind: Example
  `,
+			out: `created substitution "my-image-subst"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -253,6 +256,7 @@ openAPI:
           - marker: ${my-tag-setter}
             ref: '#/definitions/io.k8s.cli.setters.my-tag-setter'
  `,
+			out: `created substitution "my-nested-subst"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -341,7 +345,7 @@ spec:
   substVal: prefix-1234
         	            	
  `,
-			err: "setters must have different name than the substitution: foo",
+			err: `setters must have different name than the substitution: foo`,
 		},
 	}
 	for i := range tests {
@@ -351,22 +355,18 @@ spec:
 			openapi.ResetOpenAPI()
 			defer openapi.ResetOpenAPI()
 
-			f, err := ioutil.TempFile("", "k8s-cli-")
+			baseDir, err := ioutil.TempDir("", "")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			defer os.Remove(f.Name())
-			err = ioutil.WriteFile(f.Name(), []byte(test.inputOpenAPI), 0600)
+			defer os.RemoveAll(baseDir)
+			f := filepath.Join(baseDir, "Krmfile")
+			err = ioutil.WriteFile(f, []byte(test.inputOpenAPI), 0600)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			old := ext.GetOpenAPIFile
-			defer func() { ext.GetOpenAPIFile = old }()
-			ext.GetOpenAPIFile = func(args []string) (s string, err error) {
-				return f.Name(), nil
-			}
 
-			r, err := ioutil.TempFile("", "k8s-cli-*.yaml")
+			r, err := ioutil.TempFile(baseDir, "k8s-cli-*.yaml")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -379,7 +379,7 @@ spec:
 			runner := commands.NewCreateSubstitutionRunner("")
 			out := &bytes.Buffer{}
 			runner.Command.SetOut(out)
-			runner.Command.SetArgs(append([]string{r.Name()}, test.args...))
+			runner.Command.SetArgs(append([]string{baseDir}, test.args...))
 			err = runner.Command.Execute()
 
 			if test.err != "" {
@@ -393,7 +393,14 @@ spec:
 				t.FailNow()
 			}
 
-			if !assert.Equal(t, test.out, out.String()) {
+			expectedOut := strings.Replace(test.out, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expectedOut, "\\", "/", -1)
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(out.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			if !assert.Contains(t, actualNormalized, expectedNormalized) {
 				t.FailNow()
 			}
 
@@ -407,7 +414,7 @@ spec:
 				t.FailNow()
 			}
 
-			actualOpenAPI, err := ioutil.ReadFile(f.Name())
+			actualOpenAPI, err := ioutil.ReadFile(f)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -419,3 +426,89 @@ spec:
 		})
 	}
 }
+
+func TestCreateSubstSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "create-subst-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			args:    []string{"image-tag", "--field-value", "mysql:1.7.9", "--pattern", "${image}:${tag}", "-R"},
+			expected: `${baseDir}/mysql/
+created substitution "image-tag"
+
+${baseDir}/mysql/storage/
+created substitution "image-tag"
+`,
+		},
+		{
+			name:        "create-subst-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql",
+			args:        []string{"image-tag", "--field-value", "mysql:1.7.9", "--pattern", "${image}:${tag}"},
+			expected: `${baseDir}/mysql/
+created substitution "image-tag"`,
+		},
+		{
+			name:        "create-subst-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"image-tag", "--field-value", "storage:1.7.9", "--pattern", "${image}:${tag}"},
+			expected: `${baseDir}/mysql/storage/
+created substitution "image-tag"`,
+		},
+		{
+			name:        "create-subst-already-exists",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql",
+			args:        []string{"image-tag", "--field-value", "mysql:1.7.9", "--pattern", "${image}:${tag}", "-R"},
+			expected: `${baseDir}/mysql/
+substitution with name "image-tag" already exists
+
+${baseDir}/mysql/nosetters/
+created substitution "image-tag"
+
+${baseDir}/mysql/storage/
+created substitution "image-tag"`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.NewCreateSubstitutionRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, strings.TrimSpace(expectedNormalized), strings.TrimSpace(actualNormalized)) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cmddeletesetter.go

@@ -4,11 +4,14 @@
 package commands
 
 import (
+	"fmt"
+	"io"
+	"path/filepath"
+
 	"github.com/spf13/cobra"
 	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/fieldmeta"
-	"sigs.k8s.io/kustomize/kyaml/openapi"
 	"sigs.k8s.io/kustomize/kyaml/setters2/settersutil"
 )
 
@@ -24,6 +27,8 @@ func NewDeleteSetterRunner(parent string) *DeleteSetterRunner {
 		PreRunE: r.preRunE,
 		RunE:    r.runE,
 	}
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"deletes setter recursively in all the nested subpackages")
 	fixDocs(parent, c)
 	r.Command = c
 
@@ -35,9 +40,10 @@ func DeleteSetterCommand(parent string) *cobra.Command {
 }
 
 type DeleteSetterRunner struct {
-	Command      *cobra.Command
-	DeleteSetter settersutil.DeleterCreator
-	OpenAPIFile  string
+	Command            *cobra.Command
+	DeleteSetter       settersutil.DeleterCreator
+	OpenAPIFile        string
+	RecurseSubPackages bool
 }
 
 func (r *DeleteSetterRunner) preRunE(c *cobra.Command, args []string) error {
@@ -50,17 +56,49 @@ func (r *DeleteSetterRunner) preRunE(c *cobra.Command, args []string) error {
 		return err
 	}
 
-	if err := openapi.AddSchemaFromFile(r.OpenAPIFile); err != nil {
-		return err
-	}
-
 	return nil
 }
 
 func (r *DeleteSetterRunner) runE(c *cobra.Command, args []string) error {
-	return handleError(c, r.delete(c, args))
+	e := executeCmdOnPkgs{
+		needOpenAPI:        true,
+		writer:             c.OutOrStdout(),
+		rootPkgPath:        args[0],
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+	}
+	err := e.execute()
+	if err != nil {
+		return handleError(c, err)
+	}
+	return nil
 }
 
-func (r *DeleteSetterRunner) delete(c *cobra.Command, args []string) error {
-	return r.DeleteSetter.Delete(r.OpenAPIFile, args[0])
+func (r *DeleteSetterRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.DeleteSetter = settersutil.DeleterCreator{
+		Name:               r.DeleteSetter.Name,
+		DefinitionPrefix:   fieldmeta.SetterDefinitionPrefix,
+		RecurseSubPackages: r.RecurseSubPackages,
+		OpenAPIFileName:    openAPIFileName,
+		OpenAPIPath:        filepath.Join(pkgPath, openAPIFileName),
+		ResourcesPath:      pkgPath,
+	}
+
+	err = r.DeleteSetter.Delete()
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.DeleteSetter.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprintf(w, "deleted setter %q\n", r.DeleteSetter.Name)
+	}
+	return nil
 }

cmd/config/internal/commands/cmddeletesetter_test.go

@@ -7,12 +7,13 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
@@ -52,6 +53,7 @@ openAPI:
           value: "3"
           setBy: me
 `,
+			out: `deleted setter "replicas-setter"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -95,6 +97,7 @@ openAPI:
           name: image
           value: nginx
 `,
+			out: `deleted setter "replicas-setter"`,
 			expectedOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -158,6 +161,7 @@ spec:
   - "b"
   - "c"
  `,
+			out: `deleted setter "list"`,
 			expectedResources: `
 apiVersion: example.com/v1beta1
 kind: Example1
@@ -226,7 +230,7 @@ metadata:
 spec:
   replicas: 3 # {"$openapi" : "replicas-setter"}
  `,
-			err: `setter with name image does not exist`,
+			err: `setter "image" does not exist`,
 		},
 		{
 			name: "delete setter used in substitution error",
@@ -287,7 +291,7 @@ openAPI:
 apiVersion: apps/v1
 kind: Deployment
  `,
-			err: `setter is used in substitution image, please delete the parent substitution first`,
+			err: `setter "image-name" is used in substitution "image", please delete the parent substitution first`,
 		},
 	}
 	for i := range tests {
@@ -297,24 +301,18 @@ kind: Deployment
 			openapi.ResetOpenAPI()
 			defer openapi.ResetOpenAPI()
 
-			f, err := ioutil.TempFile("", "k8s-cli-")
+			baseDir, err := ioutil.TempDir("", "")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			defer os.Remove(f.Name())
-
-			err = ioutil.WriteFile(f.Name(), []byte(test.inputOpenAPI), 0600)
+			defer os.RemoveAll(baseDir)
+			f := filepath.Join(baseDir, "Krmfile")
+			err = ioutil.WriteFile(f, []byte(test.inputOpenAPI), 0600)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
 
-			old := ext.GetOpenAPIFile
-			defer func() { ext.GetOpenAPIFile = old }()
-			ext.GetOpenAPIFile = func(args []string) (s string, err error) {
-				return f.Name(), nil
-			}
-
-			r, err := ioutil.TempFile("", "k8s-cli-*.yaml")
+			r, err := ioutil.TempFile(baseDir, "k8s-cli-*.yaml")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -327,21 +325,29 @@ kind: Deployment
 			runner := commands.NewDeleteSetterRunner("")
 			out := &bytes.Buffer{}
 			runner.Command.SetOut(out)
-			runner.Command.SetArgs(append([]string{r.Name()}, test.args...))
+			runner.Command.SetArgs(append([]string{baseDir}, test.args...))
 			err = runner.Command.Execute()
+
 			if test.err != "" {
 				if !assert.NotNil(t, err) {
 					t.FailNow()
-				} else {
-					assert.Equal(t, err.Error(), test.err)
-					return
 				}
+				assert.Equal(t, test.err, err.Error())
+				return
 			}
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
 
-			if !assert.Equal(t, test.out, out.String()) {
+			// normalize path format for windows
+			actualNorm := strings.Replace(
+				strings.Replace(out.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expectedOut := strings.Replace(test.out, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expectedOut, "\\", "/", -1)
+
+			if !assert.Contains(t, strings.TrimSpace(actualNorm), expectedNormalized) {
 				t.FailNow()
 			}
 
@@ -355,7 +361,7 @@ kind: Deployment
 				t.FailNow()
 			}
 
-			actualOpenAPI, err := ioutil.ReadFile(f.Name())
+			actualOpenAPI, err := ioutil.ReadFile(f)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -367,3 +373,80 @@ kind: Deployment
 		})
 	}
 }
+
+func TestDeleteSetterSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "delete-setter-recurse-subpackages",
+			dataset: "dataset-with-setters",
+			args:    []string{"namespace", "-R"},
+			expected: `${baseDir}/mysql/
+deleted setter "namespace"
+
+${baseDir}/mysql/nosetters/
+setter "namespace" does not exist
+
+${baseDir}/mysql/storage/
+deleted setter "namespace"
+`,
+		},
+		{
+			name:        "delete-setter-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql",
+			args:        []string{"namespace"},
+			expected: `${baseDir}/mysql/
+deleted setter "namespace"
+`,
+		},
+		{
+			name:        "delete-setter-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"namespace"},
+			expected: `${baseDir}/mysql/storage/
+deleted setter "namespace"
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			//defer os.RemoveAll(baseDir)
+			runner := commands.NewDeleteSetterRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cmddeletesubstitution.go

@@ -4,10 +4,13 @@
 package commands
 
 import (
+	"fmt"
+	"io"
+	"path/filepath"
+
 	"github.com/spf13/cobra"
 	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/kyaml/fieldmeta"
-	"sigs.k8s.io/kustomize/kyaml/openapi"
 	"sigs.k8s.io/kustomize/kyaml/setters2/settersutil"
 )
 
@@ -20,6 +23,8 @@ func NewDeleteSubstitutionRunner(parent string) *DeleteSubstitutionRunner {
 		PreRunE: r.preRunE,
 		RunE:    r.runE,
 	}
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"deletes substitution recursively in all the nested subpackages")
 	fixDocs(parent, c)
 	r.Command = c
 
@@ -34,6 +39,7 @@ type DeleteSubstitutionRunner struct {
 	Command            *cobra.Command
 	DeleteSubstitution settersutil.DeleterCreator
 	OpenAPIFile        string
+	RecurseSubPackages bool
 }
 
 func (r *DeleteSubstitutionRunner) preRunE(c *cobra.Command, args []string) error {
@@ -46,17 +52,49 @@ func (r *DeleteSubstitutionRunner) preRunE(c *cobra.Command, args []string) erro
 		return err
 	}
 
-	if err := openapi.AddSchemaFromFile(r.OpenAPIFile); err != nil {
-		return err
-	}
-
 	return nil
 }
 
 func (r *DeleteSubstitutionRunner) runE(c *cobra.Command, args []string) error {
-	return handleError(c, r.delete(c, args))
+	e := executeCmdOnPkgs{
+		needOpenAPI:        true,
+		writer:             c.OutOrStdout(),
+		rootPkgPath:        args[0],
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+	}
+	err := e.execute()
+	if err != nil {
+		return handleError(c, err)
+	}
+	return nil
 }
 
-func (r *DeleteSubstitutionRunner) delete(c *cobra.Command, args []string) error {
-	return r.DeleteSubstitution.Delete(r.OpenAPIFile, args[0])
+func (r *DeleteSubstitutionRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.DeleteSubstitution = settersutil.DeleterCreator{
+		Name:               r.DeleteSubstitution.Name,
+		DefinitionPrefix:   fieldmeta.SubstitutionDefinitionPrefix,
+		RecurseSubPackages: r.RecurseSubPackages,
+		OpenAPIFileName:    openAPIFileName,
+		OpenAPIPath:        filepath.Join(pkgPath, openAPIFileName),
+		ResourcesPath:      pkgPath,
+	}
+
+	err = r.DeleteSubstitution.Delete()
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.DeleteSubstitution.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprintf(w, "deleted substitution %q\n", r.DeleteSubstitution.Name)
+	}
+	return nil
 }

cmd/config/internal/commands/cmddeletesubstitution_test.go

@@ -7,12 +7,13 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
@@ -79,6 +80,7 @@ spec:
       - name: sidecar
         image: nginx:1.7.9 # {"$ref":"#/definitions/io.k8s.cli.substitutions.my.image"}
  `,
+			out: `deleted substitution "my.image"`,
 			expectedResources: `
 apiVersion: apps/v1
 kind: Deployment
@@ -169,6 +171,7 @@ spec:
       - name: sidecar
         image: nginx:1.7.9 # {"$openapi":"my-image-sub"}
  `,
+			out: `deleted substitution "my-image-sub"`,
 			expectedResources: `
 apiVersion: apps/v1
 kind: Deployment
@@ -297,7 +300,7 @@ openAPI:
           value: "3"
           setBy: me
  `,
-			err: "substitution with name my-image-sub-not-present does not exist",
+			err: `substitution "my-image-sub-not-present" does not exist`,
 		},
 
 		{
@@ -415,7 +418,7 @@ spec:
       - name: sidecar
         image: nginx::1.7.9 # {"$openapi":"my-image-subst"}
  `,
-			err: "substitution is used in substitution my-nested-subst, please delete the parent substitution first",
+			err: `substitution "my-image-subst" is used in substitution "my-nested-subst", please delete the parent substitution first`,
 		},
 	}
 	for i := range tests {
@@ -425,24 +428,18 @@ spec:
 			openapi.ResetOpenAPI()
 			defer openapi.ResetOpenAPI()
 
-			f, err := ioutil.TempFile("", "k8s-cli-")
+			baseDir, err := ioutil.TempDir("", "")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			defer os.Remove(f.Name())
-
-			err = ioutil.WriteFile(f.Name(), []byte(test.inputOpenAPI), 0600)
+			defer os.RemoveAll(baseDir)
+			f := filepath.Join(baseDir, "Krmfile")
+			err = ioutil.WriteFile(f, []byte(test.inputOpenAPI), 0600)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
 
-			old := ext.GetOpenAPIFile
-			defer func() { ext.GetOpenAPIFile = old }()
-			ext.GetOpenAPIFile = func(args []string) (s string, err error) {
-				return f.Name(), nil
-			}
-
-			r, err := ioutil.TempFile("", "k8s-cli-*.yaml")
+			r, err := ioutil.TempFile(baseDir, "k8s-cli-*.yaml")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -455,21 +452,38 @@ spec:
 			runner := commands.NewDeleteSubstitutionRunner("")
 			out := &bytes.Buffer{}
 			runner.Command.SetOut(out)
-			runner.Command.SetArgs(append([]string{r.Name()}, test.args...))
+			runner.Command.SetArgs(append([]string{baseDir}, test.args...))
 			err = runner.Command.Execute()
+
 			if test.err != "" {
 				if !assert.NotNil(t, err) {
 					t.FailNow()
-				} else {
-					assert.Equal(t, err.Error(), test.err)
-					return
 				}
+				assert.Equal(t, test.err, err.Error())
+				return
 			}
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
 
-			if !assert.Equal(t, test.out, out.String()) {
+			// normalize path format for windows
+			actualNorm := strings.Replace(
+				strings.Replace(out.String(), "\\", "/", -1),
+				"//", "/", -1)
+			expectedOut := strings.Replace(test.out, "${baseDir}", baseDir, -1)
+			expectedNorm := strings.Replace(expectedOut, "\\", "/", -1)
+
+			if !assert.Contains(t, strings.TrimSpace(actualNorm), expectedNorm) {
+				t.FailNow()
+			}
+
+			actualOpenAPI, err := ioutil.ReadFile(f)
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			if !assert.Equal(t,
+				strings.TrimSpace(test.expectedOpenAPI),
+				strings.TrimSpace(string(actualOpenAPI))) {
 				t.FailNow()
 			}
 
@@ -480,16 +494,74 @@ spec:
 			if !assert.Equal(t,
 				strings.TrimSpace(test.expectedResources),
 				strings.TrimSpace(string(actualResources))) {
-				return
-			}
-
-			actualOpenAPI, err := ioutil.ReadFile(f.Name())
-			if !assert.NoError(t, err) {
-				t.FailNow()
-			}
-			if !assert.Equal(t,
-				strings.TrimSpace(test.expectedOpenAPI),
-				strings.TrimSpace(string(actualOpenAPI))) {
+				t.FailNow()
+			}
+		})
+	}
+}
+
+func TestDeleteSubstitutionSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "delete-substitution-recurse-subpackages",
+			dataset: "dataset-with-setters",
+			args:    []string{"image-tag", "-R"},
+			expected: `${baseDir}/mysql/
+deleted substitution "image-tag"
+
+${baseDir}/mysql/nosetters/
+substitution "image-tag" does not exist
+
+${baseDir}/mysql/storage/
+substitution "image-tag" does not exist
+`,
+		},
+		{
+			name:        "delete-setter-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql",
+			args:        []string{"image-tag"},
+			expected: `${baseDir}/mysql/
+deleted substitution "image-tag"
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			//defer os.RemoveAll(baseDir)
+			runner := commands.NewDeleteSubstitutionRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
 				t.FailNow()
 			}
 		})

cmd/config/internal/commands/cmdlistsetters.go

@@ -7,15 +7,14 @@ import (
 	"fmt"
 	"io"
 	"os"
+	"path/filepath"
 	"strings"
 
 	"github.com/olekukonko/tablewriter"
 	"github.com/spf13/cobra"
 	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
-	"sigs.k8s.io/kustomize/kyaml/errors"
 	"sigs.k8s.io/kustomize/kyaml/fieldmeta"
-	"sigs.k8s.io/kustomize/kyaml/pathutil"
 	"sigs.k8s.io/kustomize/kyaml/setters"
 	"sigs.k8s.io/kustomize/kyaml/setters2"
 )
@@ -36,6 +35,8 @@ func NewListSettersRunner(parent string) *ListSettersRunner {
 		"output as github markdown")
 	c.Flags().BoolVar(&r.IncludeSubst, "include-subst", false,
 		"include substitutions in the output")
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", true,
+		"list setters recursively in all the nested subpackages")
 	fixDocs(parent, c)
 	r.Command = c
 	return r
@@ -46,11 +47,12 @@ func ListSettersCommand(parent string) *cobra.Command {
 }
 
 type ListSettersRunner struct {
-	Command      *cobra.Command
-	Lookup       setters.LookupSetters
-	List         setters2.List
-	Markdown     bool
-	IncludeSubst bool
+	Command            *cobra.Command
+	Lookup             setters.LookupSetters
+	List               setters2.List
+	Markdown           bool
+	IncludeSubst       bool
+	RecurseSubPackages bool
 }
 
 func (r *ListSettersRunner) preRunE(c *cobra.Command, args []string) error {
@@ -65,48 +67,50 @@ func (r *ListSettersRunner) preRunE(c *cobra.Command, args []string) error {
 
 func (r *ListSettersRunner) runE(c *cobra.Command, args []string) error {
 	if setterVersion == "v2" {
-		openAPIFileName, err := ext.OpenAPIFileName()
-		if err != nil {
-			return err
+		e := executeCmdOnPkgs{
+			needOpenAPI:        true,
+			writer:             c.OutOrStdout(),
+			rootPkgPath:        args[0],
+			recurseSubPackages: r.RecurseSubPackages,
+			cmdRunner:          r,
 		}
 
-		openAPIPaths, err := pathutil.SubDirsWithFile(args[0], openAPIFileName)
+		err := e.execute()
 		if err != nil {
-			return err
-		}
-		if len(openAPIPaths) == 0 {
-			return errors.Errorf("unable to find %s in %s", openAPIFileName, args[0])
-		}
-
-		// list setters for all the subpackages with openAPI file paths
-		for _, openAPIPath := range openAPIPaths {
-			r.List = setters2.List{
-				Name:            r.List.Name,
-				OpenAPIFileName: openAPIFileName,
-			}
-			resourcePath := strings.TrimSuffix(openAPIPath, openAPIFileName)
-			fmt.Fprintf(c.OutOrStdout(), "%s\n", resourcePath)
-			if err := r.ListSetters(c, openAPIPath, resourcePath); err != nil {
-				return err
-			}
-			if r.IncludeSubst {
-				if err := r.ListSubstitutions(c, openAPIPath); err != nil {
-					return err
-				}
-			}
+			return handleError(c, err)
 		}
 		return nil
 	}
-
 	return handleError(c, lookup(r.Lookup, c, args))
 }
 
-func (r *ListSettersRunner) ListSetters(c *cobra.Command, openAPIPath, resourcePath string) error {
+func (r *ListSettersRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.List = setters2.List{
+		Name:            r.List.Name,
+		OpenAPIFileName: openAPIFileName,
+	}
+	openAPIPath := filepath.Join(pkgPath, openAPIFileName)
+	if err := r.ListSetters(w, openAPIPath, pkgPath); err != nil {
+		return err
+	}
+	if r.IncludeSubst {
+		if err := r.ListSubstitutions(w, openAPIPath); err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
+func (r *ListSettersRunner) ListSetters(w io.Writer, openAPIPath, resourcePath string) error {
 	// use setters v2
 	if err := r.List.ListSetters(openAPIPath, resourcePath); err != nil {
 		return err
 	}
-	table := newTable(c.OutOrStdout(), r.Markdown)
+	table := newTable(w, r.Markdown)
 	table.SetHeader([]string{"NAME", "VALUE", "SET BY", "DESCRIPTION", "COUNT", "REQUIRED"})
 	for i := range r.List.Setters {
 		s := r.List.Setters[i]
@@ -137,12 +141,12 @@ func (r *ListSettersRunner) ListSetters(c *cobra.Command, openAPIPath, resourceP
 	return nil
 }
 
-func (r *ListSettersRunner) ListSubstitutions(c *cobra.Command, openAPIPath string) error {
+func (r *ListSettersRunner) ListSubstitutions(w io.Writer, openAPIPath string) error {
 	// use setters v2
 	if err := r.List.ListSubst(openAPIPath); err != nil {
 		return err
 	}
-	table := newTable(c.OutOrStdout(), r.Markdown)
+	table := newTable(w, r.Markdown)
 	b := tablewriter.Border{Top: true}
 	table.SetBorders(b)
 

cmd/config/internal/commands/cmdlistsetters_test.go

@@ -471,9 +471,11 @@ func TestListSettersSubPackages(t *testing.T) {
 	}{
 		{
 			name:    "list-replicas",
-			dataset: "dataset1",
+			dataset: "dataset-with-setters",
 			args:    []string{"--include-subst"},
-			expected: `test/testdata/dataset1/mysql/
+			expected: `
+
+test/testdata/dataset-with-setters/mysql/
     NAME       VALUE    SET BY   DESCRIPTION   COUNT   REQUIRED  
   image       mysql                            1       No        
   namespace   myspace                          1       No        
@@ -481,11 +483,26 @@ func TestListSettersSubPackages(t *testing.T) {
 --------------- ----------------- --------------
   SUBSTITUTION       PATTERN       REFERENCES   
   image-tag      ${image}:${tag}   [image,tag]  
-test/testdata/dataset1/mysql/nosetters/
+
+test/testdata/dataset-with-setters/mysql/nosetters/
   NAME   VALUE   SET BY   DESCRIPTION   COUNT   REQUIRED  
-test/testdata/dataset1/mysql/storage/
+
+test/testdata/dataset-with-setters/mysql/storage/
     NAME       VALUE    SET BY   DESCRIPTION   COUNT   REQUIRED  
   namespace   myspace                          1       No        
+`,
+		},
+		{
+			name:    "list-replicas",
+			dataset: "dataset-with-setters/mysql",
+			args:    []string{"--recurse-subpackages=false"},
+			expected: `
+
+test/testdata/dataset-with-setters/mysql/
+    NAME       VALUE    SET BY   DESCRIPTION   COUNT   REQUIRED  
+  image       mysql                            1       No        
+  namespace   myspace                          1       No        
+  tag         1.7.9                            1       No         
 `,
 		},
 	}
@@ -509,7 +526,7 @@ test/testdata/dataset1/mysql/storage/
 			// normalize path format for windows
 			actualNormalized := strings.Replace(actual.String(), "\\", "/", -1)
 
-			if !assert.Equal(t, test.expected, actualNormalized) {
+			if !assert.Equal(t, strings.TrimSpace(test.expected), strings.TrimSpace(actualNormalized)) {
 				t.FailNow()
 			}
 		})

cmd/config/internal/commands/cmdset.go

@@ -5,7 +5,9 @@ package commands
 
 import (
 	"fmt"
+	"io"
 	"os"
+	"path/filepath"
 
 	"github.com/olekukonko/tablewriter"
 	"github.com/spf13/cobra"
@@ -39,6 +41,8 @@ func NewSetRunner(parent string) *SetRunner {
 		"annotate the field with a description of its value")
 	c.Flags().StringVar(&setterVersion, "version", "",
 		"use this version of the setter format")
+	c.Flags().BoolVarP(&r.Set.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"sets recursively in all the nested subpackages")
 	c.Flags().MarkHidden("version")
 
 	return r
@@ -126,15 +130,23 @@ func (r *SetRunner) preRunE(c *cobra.Command, args []string) error {
 			return err
 		}
 	}
-
 	return nil
 }
 
 func (r *SetRunner) runE(c *cobra.Command, args []string) error {
 	if setterVersion == "v2" {
-		count, err := r.Set.Set(r.OpenAPIFile, args[0])
-		fmt.Fprintf(c.OutOrStdout(), "set %d fields\n", count)
-		return handleError(c, err)
+		e := executeCmdOnPkgs{
+			needOpenAPI:        true,
+			writer:             c.OutOrStdout(),
+			rootPkgPath:        args[0],
+			recurseSubPackages: r.Set.RecurseSubPackages,
+			cmdRunner:          r,
+		}
+		err := e.execute()
+		if err != nil {
+			return handleError(c, err)
+		}
+		return nil
 	}
 	if len(args) > 2 || c.Flag("values").Changed {
 		return handleError(c, r.perform(c, args))
@@ -142,6 +154,38 @@ func (r *SetRunner) runE(c *cobra.Command, args []string) error {
 	return handleError(c, lookup(r.Lookup, c, args))
 }
 
+func (r *SetRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	r.Set = settersutil.FieldSetter{
+		Name:               r.Set.Name,
+		Value:              r.Set.Value,
+		ListValues:         r.Set.ListValues,
+		Description:        r.Set.Description,
+		SetBy:              r.Set.SetBy,
+		Count:              0,
+		OpenAPIPath:        filepath.Join(pkgPath, openAPIFileName),
+		OpenAPIFileName:    openAPIFileName,
+		ResourcesPath:      pkgPath,
+		RecurseSubPackages: r.Set.RecurseSubPackages,
+	}
+	count, err := r.Set.Set()
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.Set.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprintf(w, "set %d field(s)\n", count)
+	}
+	return nil
+}
+
 func lookup(l setters.LookupSetters, c *cobra.Command, args []string) error {
 	// lookup the setters
 	err := kio.Pipeline{

cmd/config/internal/commands/cmdset_test.go

@@ -7,12 +7,13 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
-	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
@@ -30,7 +31,7 @@ func TestSetCommand(t *testing.T) {
 		{
 			name: "set replicas",
 			args: []string{"replicas", "4", "--description", "hi there", "--set-by", "pw"},
-			out:  "set 1 fields\n",
+			out:  "set 1 field(s)\n",
 			inputOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -126,7 +127,7 @@ spec:
 		{
 			name: "set replicas no description",
 			args: []string{"replicas", "4"},
-			out:  "set 1 fields\n",
+			out:  "set 1 field(s)\n",
 			inputOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -174,7 +175,7 @@ spec:
 		{
 			name: "set image with value",
 			args: []string{"tag", "1.8.1"},
-			out:  "set 1 fields\n",
+			out:  "set 1 field(s)\n",
 			inputOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -509,7 +510,7 @@ list in body should have at most 2 items`,
 		{
 			name: "set replicas with value set by flag",
 			args: []string{"replicas", "--values", "4", "--description", "hi there"},
-			out:  "set 1 fields\n",
+			out:  "set 1 field(s)\n",
 			inputOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -605,7 +606,7 @@ spec:
 		{
 			name: "openAPI list values set by flag success",
 			args: []string{"list", "--values", "10", "--values", "11"},
-			out:  "set 1 fields\n",
+			out:  "set 1 field(s)\n",
 			inputOpenAPI: `
 kind: Kptfile
 openAPI:
@@ -709,7 +710,7 @@ list in body should have at most 2 items`,
 		{
 			name: "nested substitution",
 			args: []string{"my-image-setter", "ubuntu"},
-			out:  "set 2 fields\n",
+			out:  "set 2 field(s)\n",
 			inputOpenAPI: `
 apiVersion: v1alpha1
 kind: Example
@@ -1013,22 +1014,19 @@ spec:
 			openapi.ResetOpenAPI()
 			defer openapi.ResetOpenAPI()
 
-			f, err := ioutil.TempFile("", "k8s-cli-")
+			baseDir, err := ioutil.TempDir("", "")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			defer os.Remove(f.Name())
-			err = ioutil.WriteFile(f.Name(), []byte(test.inputOpenAPI), 0600)
+			defer os.RemoveAll(baseDir)
+
+			f := filepath.Join(baseDir, "Krmfile")
+			err = ioutil.WriteFile(f, []byte(test.inputOpenAPI), 0600)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
-			old := ext.GetOpenAPIFile
-			defer func() { ext.GetOpenAPIFile = old }()
-			ext.GetOpenAPIFile = func(args []string) (s string, err error) {
-				return f.Name(), nil
-			}
 
-			r, err := ioutil.TempFile("", "k8s-cli-*.yaml")
+			r, err := ioutil.TempFile(baseDir, "k8s-cli-*.yaml")
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -1041,7 +1039,7 @@ spec:
 			runner := commands.NewSetRunner("")
 			out := &bytes.Buffer{}
 			runner.Command.SetOut(out)
-			runner.Command.SetArgs(append([]string{r.Name()}, test.args...))
+			runner.Command.SetArgs(append([]string{baseDir}, test.args...))
 			err = runner.Command.Execute()
 			if test.errMsg != "" {
 				if !assert.NotNil(t, err) {
@@ -1056,7 +1054,7 @@ spec:
 				t.FailNow()
 			}
 
-			if test.errMsg == "" && !assert.Equal(t, test.out, out.String()) {
+			if test.errMsg == "" && !assert.Contains(t, out.String(), strings.TrimSpace(test.out)) {
 				t.FailNow()
 			}
 
@@ -1070,7 +1068,7 @@ spec:
 				t.FailNow()
 			}
 
-			actualOpenAPI, err := ioutil.ReadFile(f.Name())
+			actualOpenAPI, err := ioutil.ReadFile(f)
 			if !assert.NoError(t, err) {
 				t.FailNow()
 			}
@@ -1082,3 +1080,82 @@ spec:
 		})
 	}
 }
+
+func TestSetSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "set-recurse-subpackages",
+			dataset: "dataset-with-setters",
+			args:    []string{"namespace", "otherspace", "-R"},
+			expected: `${baseDir}/mysql/
+set 1 field(s)
+
+${baseDir}/mysql/nosetters/
+setter "namespace" is not found
+
+${baseDir}/mysql/storage/
+set 1 field(s)
+`,
+		},
+		{
+			name:        "set-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql",
+			args:        []string{"namespace", "otherspace"},
+			expected: `${baseDir}/mysql/
+set 1 field(s)
+`,
+		},
+		{
+			name:        "set-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-with-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"namespace", "otherspace"},
+			expected: `${baseDir}/mysql/storage/
+set 1 field(s)
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.NewSetRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(
+				strings.Replace(expected, "\\", "/", -1),
+				"//", "/", -1)
+			if !assert.Equal(t, strings.TrimSpace(expectedNormalized), strings.TrimSpace(actualNormalized)) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/cmdwrap_test.go

@@ -182,7 +182,7 @@ items:
   kind: Deployment
   metadata:
     name: mysql-deployment
-    namespace: myspace # {"$openapi":"namespace"}
+    namespace: myspace
     annotations:
       config.kubernetes.io/index: '0'
       config.kubernetes.io/path: 'config/mysql-deployment_deployment.yaml'
@@ -192,7 +192,7 @@ items:
       spec:
         containers:
         - name: mysql
-          image: mysql:1.7.9 # {"$openapi":"image-tag"}
+          image: mysql:1.7.9
 - apiVersion: apps/v1
   kind: Deployment
   metadata:
@@ -212,7 +212,7 @@ items:
   kind: Deployment
   metadata:
     name: storage-deployment
-    namespace: myspace # {"$openapi":"namespace"}
+    namespace: myspace
     annotations:
       config.kubernetes.io/index: '0'
       config.kubernetes.io/path: 'config/storage-deployment_deployment.yaml'

cmd/config/internal/commands/count.go

@@ -5,9 +5,11 @@ package commands
 
 import (
 	"fmt"
+	"io"
 	"sort"
 
 	"github.com/spf13/cobra"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/kio"
 	"sigs.k8s.io/kustomize/kyaml/sets"
@@ -17,18 +19,18 @@ import (
 func GetCountRunner(name string) *CountRunner {
 	r := &CountRunner{}
 	c := &cobra.Command{
-		Use:     "count DIR...",
+		Use:     "count [DIR]",
+		Args:    cobra.MaximumNArgs(1),
 		Short:   commands.CountShort,
 		Long:    commands.CountLong,
 		Example: commands.CountExamples,
 		RunE:    r.runE,
 	}
 	fixDocs(name, c)
-	c.Flags().BoolVar(&r.IncludeSubpackages, "include-subpackages", true,
-		"also print resources from subpackages.")
 	c.Flags().BoolVar(&r.Kind, "kind", true,
 		"count resources by kind.")
-
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", true,
+		"prints count of resources recursively in all the nested subpackages")
 	r.Command = c
 	return r
 }
@@ -42,20 +44,56 @@ type CountRunner struct {
 	IncludeSubpackages bool
 	Kind               bool
 	Command            *cobra.Command
+	RecurseSubPackages bool
 }
 
 func (r *CountRunner) runE(c *cobra.Command, args []string) error {
-	var inputs []kio.Reader
-	for _, a := range args {
-		inputs = append(inputs, kio.LocalPackageReader{
-			PackagePath:        a,
-			IncludeSubpackages: r.IncludeSubpackages,
-		})
-	}
-	if len(inputs) == 0 {
-		inputs = append(inputs, &kio.ByteReader{Reader: c.InOrStdin()})
+	if len(args) == 0 {
+		input := &kio.ByteReader{Reader: c.InOrStdin()}
+
+		return handleError(c, kio.Pipeline{
+			Inputs:  []kio.Reader{input},
+			Outputs: r.out(c.OutOrStdout()),
+		}.Execute())
 	}
 
+	e := executeCmdOnPkgs{
+		writer:             c.OutOrStdout(),
+		needOpenAPI:        false,
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+		rootPkgPath:        args[0],
+	}
+
+	return e.execute()
+}
+
+func (r *CountRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+
+	input := kio.LocalPackageReader{PackagePath: pkgPath, PackageFileName: openAPIFileName}
+
+	err = kio.Pipeline{
+		Inputs:  []kio.Reader{input},
+		Outputs: r.out(w),
+	}.Execute()
+
+	if err != nil {
+		// return err if there is only package
+		if !r.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if there are multiple packages to annotate
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	}
+	return nil
+}
+
+func (r *CountRunner) out(w io.Writer) []kio.Writer {
 	var out []kio.Writer
 	if r.Kind {
 		out = append(out, kio.WriterFunc(func(nodes []*yaml.RNode) error {
@@ -69,20 +107,15 @@ func (r *CountRunner) runE(c *cobra.Command, args []string) error {
 			order := k.List()
 			sort.Strings(order)
 			for _, k := range order {
-				fmt.Fprintf(c.OutOrStdout(), "%s: %d\n", k, count[k])
+				fmt.Fprintf(w, "%s: %d\n", k, count[k])
 			}
-
 			return nil
 		}))
-
 	} else {
 		out = append(out, kio.WriterFunc(func(nodes []*yaml.RNode) error {
-			fmt.Fprintf(c.OutOrStdout(), "%d\n", len(nodes))
+			fmt.Fprintf(w, "%d\n", len(nodes))
 			return nil
 		}))
 	}
-	return handleError(c, kio.Pipeline{
-		Inputs:  inputs,
-		Outputs: out,
-	}.Execute())
+	return out
 }

cmd/config/internal/commands/count_test.go

@@ -8,10 +8,13 @@ import (
 	"io/ioutil"
 	"os"
 	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
+	"sigs.k8s.io/kustomize/kyaml/openapi"
 )
 
 func TestCountCommand_files(t *testing.T) {
@@ -67,7 +70,80 @@ spec:
 		return
 	}
 
-	if !assert.Equal(t, "Deployment: 2\nService: 1\n", b.String()) {
+	if !assert.Contains(t, b.String(), "Deployment: 2\nService: 1\n") {
 		return
 	}
 }
+
+func TestCountSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "count-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			expected: `${baseDir}/mysql/
+Deployment: 1
+
+${baseDir}/mysql/storage/
+Deployment: 1
+`,
+		},
+		{
+			name:        "count-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			args:        []string{"-R=false"},
+			packagePath: "mysql",
+			expected: `${baseDir}/mysql/
+Deployment: 1
+`,
+		},
+		{
+			name:        "count-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"-R=false"},
+			expected: `${baseDir}/mysql/storage/
+Deployment: 1
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.GetCountRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/fmt.go

@@ -4,7 +4,11 @@
 package commands
 
 import (
+	"fmt"
+	"io"
+
 	"github.com/spf13/cobra"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/kio"
 	"sigs.k8s.io/kustomize/kyaml/kio/filters"
@@ -33,6 +37,8 @@ formatting substitution verbs {'%n': 'metadata.name', '%s': 'metadata.namespace'
 		`if true, override existing filepath annotations.`)
 	c.Flags().BoolVar(&r.UseSchema, "use-schema", false,
 		`if true, uses openapi resource schema to format resources.`)
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", false,
+		"formats resource files recursively in all the nested subpackages")
 	r.Command = c
 	return r
 }
@@ -43,12 +49,13 @@ func FmtCommand(name string) *cobra.Command {
 
 // FmtRunner contains the run function
 type FmtRunner struct {
-	Command         *cobra.Command
-	FilenamePattern string
-	SetFilenames    bool
-	KeepAnnotations bool
-	Override        bool
-	UseSchema       bool
+	Command            *cobra.Command
+	FilenamePattern    string
+	SetFilenames       bool
+	KeepAnnotations    bool
+	Override           bool
+	UseSchema          bool
+	RecurseSubPackages bool
 }
 
 func (r *FmtRunner) preRunE(c *cobra.Command, args []string) error {
@@ -59,17 +66,6 @@ func (r *FmtRunner) preRunE(c *cobra.Command, args []string) error {
 }
 
 func (r *FmtRunner) runE(c *cobra.Command, args []string) error {
-	f := []kio.Filter{filters.FormatFilter{
-		UseSchema: r.UseSchema,
-	}}
-
-	// format with file names
-	if r.SetFilenames {
-		f = append(f, &filters.FileSetter{
-			FilenamePattern: r.FilenamePattern,
-			Override:        r.Override,
-		})
-	}
 
 	// format stdin if there are no args
 	if len(args) == 0 {
@@ -79,20 +75,64 @@ func (r *FmtRunner) runE(c *cobra.Command, args []string) error {
 			KeepReaderAnnotations: r.KeepAnnotations,
 		}
 		return handleError(c, kio.Pipeline{
-			Inputs: []kio.Reader{rw}, Filters: f, Outputs: []kio.Writer{rw}}.Execute())
+			Inputs: []kio.Reader{rw}, Filters: r.fmtFilters(), Outputs: []kio.Writer{rw}}.Execute())
 	}
 
-	for i := range args {
-		path := args[i]
-		rw := &kio.LocalPackageReadWriter{
-			NoDeleteFiles:         true,
-			PackagePath:           path,
-			KeepReaderAnnotations: r.KeepAnnotations}
-		err := kio.Pipeline{
-			Inputs: []kio.Reader{rw}, Filters: f, Outputs: []kio.Writer{rw}}.Execute()
+	for _, rootPkgPath := range args {
+		e := executeCmdOnPkgs{
+			writer:             c.OutOrStdout(),
+			needOpenAPI:        false,
+			recurseSubPackages: r.RecurseSubPackages,
+			cmdRunner:          r,
+			rootPkgPath:        rootPkgPath,
+		}
+
+		err := e.execute()
 		if err != nil {
-			return handleError(c, err)
+			return err
 		}
 	}
 	return nil
 }
+
+func (r *FmtRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+
+	rw := &kio.LocalPackageReadWriter{
+		NoDeleteFiles:         true,
+		PackagePath:           pkgPath,
+		KeepReaderAnnotations: r.KeepAnnotations, PackageFileName: openAPIFileName}
+	err = kio.Pipeline{
+		Inputs: []kio.Reader{rw}, Filters: r.fmtFilters(), Outputs: []kio.Writer{rw}}.Execute()
+
+	if err != nil {
+		// return err if RecurseSubPackages is false
+		if !r.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if RecurseSubPackages is true
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	} else {
+		fmt.Fprint(w, "formatted resource files in the package\n")
+	}
+	return nil
+}
+
+func (r *FmtRunner) fmtFilters() []kio.Filter {
+	fmtFilters := []kio.Filter{filters.FormatFilter{
+		UseSchema: r.UseSchema,
+	}}
+
+	// format with file names
+	if r.SetFilenames {
+		fmtFilters = append(fmtFilters, &filters.FileSetter{
+			FilenamePattern: r.FilenamePattern,
+			Override:        r.Override,
+		})
+	}
+	return fmtFilters
+}

cmd/config/internal/commands/fmt_test.go

@@ -7,12 +7,15 @@ import (
 	"bytes"
 	"io/ioutil"
 	"os"
+	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 	"sigs.k8s.io/kustomize/kyaml/kio/filters/testyaml"
+	"sigs.k8s.io/kustomize/kyaml/openapi"
 	"sigs.k8s.io/kustomize/kyaml/testutil"
 )
 
@@ -163,3 +166,78 @@ func TestCmd_failFileContents(t *testing.T) {
 	// expect an error
 	assert.EqualError(t, err, "yaml: line 1: did not find expected node content")
 }
+
+func TestFmtSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "fmt-recurse-subpackages",
+			dataset: "dataset-with-setters",
+			args:    []string{"-R"},
+			expected: `${baseDir}/mysql/
+formatted resource files in the package
+
+${baseDir}/mysql/nosetters/
+formatted resource files in the package
+
+${baseDir}/mysql/storage/
+formatted resource files in the package
+`,
+		},
+		{
+			name:        "fmt-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql",
+			expected: `${baseDir}/mysql/
+formatted resource files in the package
+`,
+		},
+		{
+			name:        "fmt-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			expected: `${baseDir}/mysql/storage/
+formatted resource files in the package
+`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			// reset the openAPI afterward
+			openapi.ResetOpenAPI()
+			defer openapi.ResetOpenAPI()
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.GetFmtRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append([]string{filepath.Join(baseDir, test.packagePath)}, test.args...))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, strings.TrimSpace(expectedNormalized), strings.TrimSpace(actualNormalized)) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/grep.go

@@ -5,10 +5,12 @@ package commands
 
 import (
 	"fmt"
+	"io"
 	"strings"
 
 	"github.com/spf13/cobra"
 	"k8s.io/apimachinery/pkg/api/resource"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/kio"
 	"sigs.k8s.io/kustomize/kyaml/kio/filters"
@@ -18,22 +20,21 @@ import (
 func GetGrepRunner(name string) *GrepRunner {
 	r := &GrepRunner{}
 	c := &cobra.Command{
-		Use:     "grep QUERY [DIR]...",
+		Use:     "grep QUERY [DIR]",
 		Short:   commands.GrepShort,
 		Long:    commands.GrepLong,
 		Example: commands.GrepExamples,
 		PreRunE: r.preRunE,
 		RunE:    r.runE,
-		Args:    cobra.MinimumNArgs(1),
+		Args:    cobra.MaximumNArgs(2),
 	}
 	fixDocs(name, c)
-	c.Flags().BoolVar(&r.IncludeSubpackages, "include-subpackages", true,
-		"also print resources from subpackages.")
 	c.Flags().BoolVar(&r.KeepAnnotations, "annotate", true,
 		"annotate resources with their file origins.")
 	c.Flags().BoolVarP(&r.InvertMatch, "invert-match", "", false,
 		"Selected Resources are those not matching any of the specified patterns..")
-
+	c.Flags().BoolVarP(&r.RecurseSubPackages, "recurse-subpackages", "R", true,
+		"also print resources recursively in all the nested subpackages")
 	r.Command = c
 	return r
 }
@@ -44,11 +45,11 @@ func GrepCommand(name string) *cobra.Command {
 
 // GrepRunner contains the run function
 type GrepRunner struct {
-	IncludeSubpackages bool
-	KeepAnnotations    bool
-	Command            *cobra.Command
+	KeepAnnotations bool
+	Command         *cobra.Command
 	filters.GrepFilter
-	Format bool
+	Format             bool
+	RecurseSubPackages bool
 }
 
 func (r *GrepRunner) preRunE(c *cobra.Command, args []string) error {
@@ -101,25 +102,57 @@ func (r *GrepRunner) preRunE(c *cobra.Command, args []string) error {
 }
 
 func (r *GrepRunner) runE(c *cobra.Command, args []string) error {
-	var filters = []kio.Filter{r.GrepFilter}
-
-	var inputs []kio.Reader
-	for _, a := range args[1:] {
-		inputs = append(inputs, kio.LocalPackageReader{
-			PackagePath:        a,
-			IncludeSubpackages: r.IncludeSubpackages,
-		})
-	}
-	if len(inputs) == 0 {
-		inputs = append(inputs, &kio.ByteReader{Reader: c.InOrStdin()})
+	if len(args) == 1 {
+		input := &kio.ByteReader{Reader: c.InOrStdin()}
+		return handleError(c, kio.Pipeline{
+			Inputs:  []kio.Reader{input},
+			Filters: []kio.Filter{r.GrepFilter},
+			Outputs: []kio.Writer{kio.ByteWriter{
+				Writer:                c.OutOrStdout(),
+				KeepReaderAnnotations: r.KeepAnnotations,
+			}},
+		}.Execute())
 	}
 
-	return handleError(c, kio.Pipeline{
-		Inputs:  inputs,
-		Filters: filters,
+	e := executeCmdOnPkgs{
+		writer:             c.OutOrStdout(),
+		needOpenAPI:        false,
+		recurseSubPackages: r.RecurseSubPackages,
+		cmdRunner:          r,
+		rootPkgPath:        args[1],
+		skipPkgPathPrint:   true,
+	}
+
+	return e.execute()
+
+}
+
+func (r *GrepRunner) executeCmd(w io.Writer, pkgPath string) error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+
+	input := kio.LocalPackageReader{PackagePath: pkgPath, PackageFileName: openAPIFileName}
+
+	err = kio.Pipeline{
+		Inputs:  []kio.Reader{input},
+		Filters: []kio.Filter{r.GrepFilter},
 		Outputs: []kio.Writer{kio.ByteWriter{
-			Writer:                c.OutOrStdout(),
+			Writer:                w,
 			KeepReaderAnnotations: r.KeepAnnotations,
 		}},
-	}.Execute())
+	}.Execute()
+
+	if err != nil {
+		// return err if there is only package
+		if !r.RecurseSubPackages {
+			return err
+		} else {
+			// print error message and continue if there are multiple packages to annotate
+			fmt.Fprintf(w, "%s\n", err.Error())
+		}
+	}
+	fmt.Fprintf(w, "---")
+	return nil
 }

cmd/config/internal/commands/grep_test.go

@@ -8,10 +8,12 @@ import (
 	"io/ioutil"
 	"os"
 	"path/filepath"
+	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	"sigs.k8s.io/kustomize/cmd/config/internal/commands"
+	"sigs.k8s.io/kustomize/kyaml/copyutil"
 )
 
 // TestGrepCommand_files verifies grep reads the files and filters them
@@ -68,7 +70,7 @@ spec:
 		return
 	}
 
-	if !assert.Equal(t, `kind: Deployment
+	if !assert.Contains(t, b.String(), `kind: Deployment
 metadata:
   labels:
     app: nginx2
@@ -90,7 +92,7 @@ metadata:
 spec:
   selector:
     app: nginx
-`, b.String()) {
+`) {
 		return
 	}
 }
@@ -136,7 +138,7 @@ spec:
 		return
 	}
 
-	if !assert.Equal(t, `kind: Deployment
+	if !assert.Contains(t, b.String(), `kind: Deployment
 metadata:
   labels:
     app: nginx2
@@ -156,7 +158,7 @@ metadata:
 spec:
   selector:
     app: nginx
-`, b.String()) {
+`) {
 		return
 	}
 }
@@ -250,7 +252,7 @@ spec:
 	if !assert.NoError(t, err) {
 		return
 	}
-	if !assert.Equal(t, `kind: Deployment
+	if !assert.Contains(t, b.String(), `kind: Deployment
 metadata:
   labels:
     app: nginx1.7
@@ -264,7 +266,142 @@ spec:
       containers:
       - name: nginx
         image: nginx:1.7.9
-`, b.String()) {
+`) {
 		return
 	}
 }
+
+func TestGrepSubPackages(t *testing.T) {
+	var tests = []struct {
+		name        string
+		dataset     string
+		packagePath string
+		args        []string
+		expected    string
+	}{
+		{
+			name:    "grep-recurse-subpackages",
+			dataset: "dataset-without-setters",
+			args:    []string{"kind=Deployment"},
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: mysql-deployment
+  annotations:
+    config.kubernetes.io/index: '0'
+    config.kubernetes.io/path: 'deployment.yaml'
+spec:
+  replicas: 3
+  template:
+    spec:
+      containers:
+      - name: mysql
+        image: mysql:1.7.9
+---
+# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: storage-deployment
+  annotations:
+    config.kubernetes.io/index: '0'
+    config.kubernetes.io/path: 'deployment.yaml'
+spec:
+  replicas: 4
+  template:
+    spec:
+      containers:
+      - name: storage
+        image: storage:1.7.7
+---`,
+		},
+		{
+			name:        "grep-top-level-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			args:        []string{"kind=Deployment", "-R=false"},
+			packagePath: "mysql",
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: mysql-deployment
+  annotations:
+    config.kubernetes.io/index: '0'
+    config.kubernetes.io/path: 'deployment.yaml'
+spec:
+  replicas: 3
+  template:
+    spec:
+      containers:
+      - name: mysql
+        image: mysql:1.7.9
+---`,
+		},
+		{
+			name:        "grep-nested-pkg-no-recurse-subpackages",
+			dataset:     "dataset-without-setters",
+			packagePath: "mysql/storage",
+			args:        []string{"kind=Deployment", "-R=false"},
+			expected: `# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: storage-deployment
+  annotations:
+    config.kubernetes.io/index: '0'
+    config.kubernetes.io/path: 'deployment.yaml'
+spec:
+  replicas: 4
+  template:
+    spec:
+      containers:
+      - name: storage
+        image: storage:1.7.7
+---`,
+		},
+	}
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			sourceDir := filepath.Join("test", "testdata", test.dataset)
+			baseDir, err := ioutil.TempDir("", "")
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			copyutil.CopyDir(sourceDir, baseDir)
+			defer os.RemoveAll(baseDir)
+			runner := commands.GetGrepRunner("")
+			actual := &bytes.Buffer{}
+			runner.Command.SetOut(actual)
+			runner.Command.SetArgs(append(test.args, filepath.Join(baseDir, test.packagePath)))
+			err = runner.Command.Execute()
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expected, "${baseDir}", baseDir, -1)
+			expectedNormalized := strings.Replace(expected, "\\", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}

cmd/config/internal/commands/run-fns.go

@@ -9,11 +9,13 @@ import (
 	"strings"
 
 	"github.com/spf13/cobra"
-	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
+
 	"sigs.k8s.io/kustomize/kyaml/errors"
 	"sigs.k8s.io/kustomize/kyaml/fn/runtime/runtimeutil"
 	"sigs.k8s.io/kustomize/kyaml/runfn"
 	"sigs.k8s.io/kustomize/kyaml/yaml"
+
+	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 )
 
 // GetCatRunner returns a RunFnRunner.
@@ -60,11 +62,14 @@ func GetRunFnRunner(name string) *RunFnRunner {
 
 	r.Command.Flags().BoolVar(
 		&r.Network, "network", false, "enable network access for functions that declare it")
-	r.Command.Flags().StringVar(
-		&r.NetworkName, "network-name", "bridge", "the docker network to run the container in")
 	r.Command.Flags().StringArrayVar(
 		&r.Mounts, "mount", []string{},
 		"a list of storage options read from the filesystem")
+	r.Command.Flags().BoolVar(
+		&r.LogSteps, "log-steps", false, "log steps to stderr")
+	r.Command.Flags().StringArrayVarP(
+		&r.Env, "env", "e", []string{},
+		"a list of environment variables to be used by functions")
 	return r
 }
 
@@ -89,8 +94,9 @@ type RunFnRunner struct {
 	RunFns             runfn.RunFns
 	ResultsDir         string
 	Network            bool
-	NetworkName        string
 	Mounts             []string
+	LogSteps           bool
+	Env                []string
 }
 
 func (r *RunFnRunner) runE(c *cobra.Command, args []string) error {
@@ -99,7 +105,7 @@ func (r *RunFnRunner) runE(c *cobra.Command, args []string) error {
 
 // getContainerFunctions parses the commandline flags and arguments into explicit
 // Functions to run.
-func (r *RunFnRunner) getContainerFunctions(c *cobra.Command, args, dataItems []string) (
+func (r *RunFnRunner) getContainerFunctions(c *cobra.Command, dataItems []string) (
 	[]*yaml.RNode, error) {
 
 	if r.Image == "" && r.StarPath == "" && r.ExecPath == "" && r.StarURL == "" {
@@ -124,8 +130,8 @@ func (r *RunFnRunner) getContainerFunctions(c *cobra.Command, args, dataItems []
 		}
 		if r.Network {
 			err = fn.PipeE(
-				yaml.LookupCreate(yaml.MappingNode, "container", "network"),
-				yaml.SetField("required", yaml.NewScalarRNode("true")))
+				yaml.Lookup("container"),
+				yaml.SetField("network", yaml.NewScalarRNode("true")))
 			if err != nil {
 				return nil, err
 			}
@@ -193,7 +199,7 @@ data: {}
 	}
 	err = rc.PipeE(
 		yaml.LookupCreate(yaml.MappingNode, "metadata", "annotations"),
-		yaml.SetField("config.kubernetes.io/function", yaml.NewScalarRNode(value)))
+		yaml.SetField(runtimeutil.FunctionAnnotationKey, yaml.NewScalarRNode(value)))
 	if err != nil {
 		return nil, err
 	}
@@ -267,7 +273,7 @@ func (r *RunFnRunner) preRunE(c *cobra.Command, args []string) error {
 		return errors.Errorf("0 or 1 arguments supported, function arguments go after '--'")
 	}
 
-	fns, err := r.getContainerFunctions(c, args, dataItems)
+	fns, err := r.getContainerFunctions(c, dataItems)
 	if err != nil {
 		return err
 	}
@@ -300,11 +306,12 @@ func (r *RunFnRunner) preRunE(c *cobra.Command, args []string) error {
 		Input:          input,
 		Path:           path,
 		Network:        r.Network,
-		NetworkName:    r.NetworkName,
 		EnableStarlark: r.EnableStar,
 		EnableExec:     r.EnableExec,
 		StorageMounts:  storageMounts,
 		ResultsDir:     r.ResultsDir,
+		LogSteps:       r.LogSteps,
+		Env:            r.Env,
 	}
 
 	// don't consider args for the function

cmd/config/internal/commands/run_test.go

@@ -11,6 +11,7 @@ import (
 
 	"github.com/spf13/cobra"
 	"github.com/stretchr/testify/assert"
+
 	"sigs.k8s.io/kustomize/kyaml/runfn"
 )
 
@@ -28,7 +29,6 @@ func TestRunFnCommand_preRunE(t *testing.T) {
 		output         io.Writer
 		functionPaths  []string
 		network        bool
-		networkName    string
 		mount          []string
 	}{
 		{
@@ -94,34 +94,32 @@ apiVersion: v1
 `,
 		},
 		{
-			name:        "network enabled",
-			args:        []string{"run", "dir", "--image", "foo:bar", "--network"},
-			path:        "dir",
-			network:     true,
-			networkName: "bridge",
+			name:    "network enabled",
+			args:    []string{"run", "dir", "--image", "foo:bar", "--network"},
+			path:    "dir",
+			network: true,
 			expected: `
 metadata:
   name: function-input
   annotations:
     config.kubernetes.io/function: |
-      container: {image: 'foo:bar', network: {required: true}}
+      container: {image: 'foo:bar', network: true}
 data: {}
 kind: ConfigMap
 apiVersion: v1
 `,
 		},
 		{
-			name:        "with network name",
-			args:        []string{"run", "dir", "--image", "foo:bar", "--network", "--network-name", "foo"},
-			path:        "dir",
-			network:     true,
-			networkName: "foo",
+			name:    "with network name",
+			args:    []string{"run", "dir", "--image", "foo:bar", "--network"},
+			path:    "dir",
+			network: true,
 			expected: `
 metadata:
   name: function-input
   annotations:
     config.kubernetes.io/function: |
-      container: {image: 'foo:bar', network: {required: true}}
+      container: {image: 'foo:bar', network: true}
 data: {}
 kind: ConfigMap
 apiVersion: v1
@@ -201,8 +199,8 @@ apiVersion: v1
 			path: "dir",
 			expectedStruct: &runfn.RunFns{
 				Path:           "dir",
-				NetworkName:    "bridge",
 				EnableStarlark: true,
+				Env:            []string{},
 			},
 		},
 		{
@@ -253,9 +251,9 @@ apiVersion: v1
 			args: []string{"run", "dir", "--results-dir", "foo/", "--image", "foo:bar", "--", "a=b", "c=d", "e=f"},
 			path: "dir",
 			expectedStruct: &runfn.RunFns{
-				Path:        "dir",
-				NetworkName: "bridge",
-				ResultsDir:  "foo/",
+				Path:       "dir",
+				ResultsDir: "foo/",
+				Env:        []string{},
 			},
 			expected: `
 metadata:
@@ -283,6 +281,25 @@ apiVersion: v1
 			args: []string{"run", "dir", "--image", "foo:bar", "--", "a=b", "c", "e=f"},
 			err:  "must have keys and values separated by",
 		},
+		{
+			name: "log steps",
+			args: []string{"run", "dir", "--log-steps"},
+			path: "dir",
+			expectedStruct: &runfn.RunFns{
+				Path:     "dir",
+				LogSteps: true,
+				Env:      []string{},
+			},
+		},
+		{
+			name: "envs",
+			args: []string{"run", "dir", "--env", "FOO=BAR", "-e", "BAR"},
+			path: "dir",
+			expectedStruct: &runfn.RunFns{
+				Path: "dir",
+				Env:  []string{"FOO=BAR", "BAR"},
+			},
+		},
 	}
 
 	for i := range tests {
@@ -338,9 +355,6 @@ apiVersion: v1
 				if !assert.Equal(t, tt.network, r.RunFns.Network) {
 					t.FailNow()
 				}
-				if !assert.Equal(t, tt.networkName, r.RunFns.NetworkName) {
-					t.FailNow()
-				}
 			} else {
 				if !assert.Equal(t, false, r.RunFns.Network) {
 					t.FailNow()
@@ -385,5 +399,4 @@ apiVersion: v1
 
 		})
 	}
-
 }

cmd/config/internal/commands/test/testdata/dataset-without-setters/mysql/Krmfile

@@ -0,0 +1,6 @@
+apiVersion: krm.dev/v1alpha1
+kind: Krmfile
+metadata:
+  name: mysql
+packageMetadata:
+  shortDescription: sample description

cmd/config/internal/commands/test/testdata/dataset-without-setters/mysql/deployment.yaml

@@ -0,0 +1,15 @@
+# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: mysql-deployment
+spec:
+  replicas: 3
+  template:
+    spec:
+      containers:
+      - name: mysql
+        image: mysql:1.7.9

cmd/config/internal/commands/test/testdata/dataset-without-setters/mysql/storage/Krmfile

@@ -0,0 +1,6 @@
+apiVersion: krm.dev/v1alpha1
+kind: Krmfile
+metadata:
+  name: storage
+packageMetadata:
+  shortDescription: sample description

cmd/config/internal/commands/test/testdata/dataset-without-setters/mysql/storage/deployment.yaml

@@ -0,0 +1,15 @@
+# Copyright 2019 The Kubernetes Authors.
+# SPDX-License-Identifier: Apache-2.0
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  namespace: myspace
+  name: storage-deployment
+spec:
+  replicas: 4
+  template:
+    spec:
+      containers:
+      - name: storage
+        image: storage:1.7.7

cmd/config/internal/commands/tree.go

@@ -7,6 +7,7 @@ import (
 	"path/filepath"
 	"strings"
 
+	"sigs.k8s.io/kustomize/cmd/config/ext"
 	"sigs.k8s.io/kustomize/cmd/config/internal/generateddocs/commands"
 	"sigs.k8s.io/kustomize/kyaml/kio/filters"
 
@@ -26,8 +27,6 @@ func GetTreeRunner(name string) *TreeRunner {
 		Args:    cobra.MaximumNArgs(1),
 	}
 	fixDocs(name, c)
-	c.Flags().BoolVar(&r.IncludeSubpackages, "include-subpackages", true,
-		"also print resources from subpackages.")
 
 	// TODO(pwittrock): Figure out if these are the right things to expose, and consider making it
 	// a list of options instead of individual flags
@@ -59,29 +58,33 @@ func TreeCommand(name string) *cobra.Command {
 
 // TreeRunner contains the run function
 type TreeRunner struct {
-	IncludeSubpackages bool
-	Command            *cobra.Command
-	name               bool
-	resources          bool
-	ports              bool
-	images             bool
-	replicas           bool
-	all                bool
-	env                bool
-	args               bool
-	cmd                bool
-	fields             []string
-	includeLocal       bool
-	excludeNonLocal    bool
-	structure          string
+	Command         *cobra.Command
+	name            bool
+	resources       bool
+	ports           bool
+	images          bool
+	replicas        bool
+	all             bool
+	env             bool
+	args            bool
+	cmd             bool
+	fields          []string
+	includeLocal    bool
+	excludeNonLocal bool
+	structure       string
 }
 
 func (r *TreeRunner) runE(c *cobra.Command, args []string) error {
 	var input kio.Reader
 	var root = "."
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+	matchFilesGlob := append([]string{openAPIFileName}, kio.DefaultMatch...)
 	if len(args) == 1 {
 		root = filepath.Clean(args[0])
-		input = kio.LocalPackageReader{PackagePath: args[0]}
+		input = kio.LocalPackageReader{PackagePath: args[0], MatchFilesGlob: matchFilesGlob}
 	} else {
 		input = &kio.ByteReader{Reader: c.InOrStdin()}
 	}
@@ -156,10 +159,12 @@ func (r *TreeRunner) runE(c *cobra.Command, args []string) error {
 		Inputs:  []kio.Reader{input},
 		Filters: fltrs,
 		Outputs: []kio.Writer{kio.TreeWriter{
-			Root:      root,
-			Writer:    c.OutOrStdout(),
-			Fields:    fields,
-			Structure: kio.TreeStructure(r.structure)}},
+			Root:            root,
+			Writer:          c.OutOrStdout(),
+			Fields:          fields,
+			Structure:       kio.TreeStructure(r.structure),
+			OpenAPIFileName: openAPIFileName,
+		}},
 	}.Execute())
 }
 

cmd/config/internal/commands/tree_test.go

@@ -90,6 +90,109 @@ spec:
 	}
 }
 
+func TestTreeCommand_subpkgs(t *testing.T) {
+	d, err := ioutil.TempDir("", "kustomize-tree-test")
+	defer os.RemoveAll(d)
+	if !assert.NoError(t, err) {
+		t.FailNow()
+	}
+
+	err = os.MkdirAll(filepath.Join(d, "subpkg"), 0700)
+	if !assert.NoError(t, err) {
+		t.FailNow()
+	}
+
+	err = ioutil.WriteFile(filepath.Join(d, "f1.yaml"), []byte(`
+apiVersion: v1
+kind: Abstraction
+metadata:
+  name: foo
+  configFn:
+    container:
+      image: gcr.io/example/reconciler:v1
+  annotations:
+    config.kubernetes.io/local-config: "true"
+spec:
+  replicas: 1
+---
+kind: Deployment
+metadata:
+  labels:
+    app: nginx2
+  name: foo
+  annotations:
+    app: nginx2
+spec:
+  replicas: 1
+---
+kind: Service
+metadata:
+  name: foo
+  annotations:
+    app: nginx
+spec:
+  selector:
+    app: nginx
+`), 0600)
+	if !assert.NoError(t, err) {
+		return
+	}
+	err = ioutil.WriteFile(filepath.Join(d, "subpkg", "f2.yaml"), []byte(`kind: Deployment
+metadata:
+  labels:
+    app: nginx
+  name: bar
+  annotations:
+    app: nginx
+spec:
+  replicas: 3
+`), 0600)
+	if !assert.NoError(t, err) {
+		return
+	}
+
+	err = ioutil.WriteFile(filepath.Join(d, "Krmfile"), []byte(`apiVersion: kpt.dev/v1alpha1
+kind: Krmfile
+metadata:
+  name: mainpkg
+openAPI:
+  definitions:
+`), 0600)
+	if !assert.NoError(t, err) {
+		return
+	}
+	err = ioutil.WriteFile(filepath.Join(d, "subpkg", "Krmfile"), []byte(`apiVersion: kpt.dev/v1alpha1
+kind: Krmfile
+metadata:
+  name: subpkg
+openAPI:
+  definitions:
+`), 0600)
+	if !assert.NoError(t, err) {
+		return
+	}
+
+	// fmt the files
+	b := &bytes.Buffer{}
+	r := commands.GetTreeRunner("")
+	r.Command.SetArgs([]string{d})
+	r.Command.SetOut(b)
+	if !assert.NoError(t, r.Command.Execute()) {
+		return
+	}
+
+	if !assert.Equal(t, fmt.Sprintf(`%s
+├── [Krmfile]  Krmfile mainpkg
+├── [f1.yaml]  Deployment foo
+├── [f1.yaml]  Service foo
+└── Pkg: subpkg
+    ├── [Krmfile]  Krmfile subpkg
+    └── [f2.yaml]  Deployment bar
+`, d), b.String()) {
+		return
+	}
+}
+
 func TestTreeCommand_stdin(t *testing.T) {
 	// fmt the files
 	b := &bytes.Buffer{}

cmd/config/internal/commands/util.go

@@ -5,13 +5,91 @@ package commands
 
 import (
 	"fmt"
+	"io"
 	"os"
+	"path/filepath"
 	"strings"
 
 	"github.com/go-errors/errors"
 	"github.com/spf13/cobra"
+	"sigs.k8s.io/kustomize/cmd/config/ext"
+	"sigs.k8s.io/kustomize/kyaml/openapi"
+	"sigs.k8s.io/kustomize/kyaml/pathutil"
 )
 
+// cmdRunner interface holds executeCmd definition which executes respective command's
+// implementation on single package
+type cmdRunner interface {
+	executeCmd(w io.Writer, pkgPath string) error
+}
+
+// executeCmdOnPkgs struct holds the parameters necessary to
+// execute the filter command on packages in rootPkgPath
+type executeCmdOnPkgs struct {
+	rootPkgPath        string
+	recurseSubPackages bool
+	needOpenAPI        bool
+	cmdRunner          cmdRunner
+	writer             io.Writer
+	skipPkgPathPrint   bool
+}
+
+// executeCmdOnPkgs takes the function definition for a command to be executed on single package, applies that definition
+// recursively on all the subpackages present in rootPkgPath if recurseSubPackages is true, else applies the command on rootPkgPath only
+func (e executeCmdOnPkgs) execute() error {
+	openAPIFileName, err := ext.OpenAPIFileName()
+	if err != nil {
+		return err
+	}
+
+	pkgsPaths, err := pathutil.DirsWithFile(e.rootPkgPath, openAPIFileName, e.recurseSubPackages)
+	if err != nil {
+		return err
+	}
+
+	if len(pkgsPaths) == 0 {
+		// at this point, there are no openAPI files in the rootPkgPath
+		if e.needOpenAPI {
+			// few executions need openAPI file to be present(ex: setters commands), if true throw an error
+			return errors.Errorf("unable to find %q in package %q", openAPIFileName, e.rootPkgPath)
+		}
+
+		// add root path for commands which doesn't need openAPI(ex: annotate, fmt)
+		pkgsPaths = []string{e.rootPkgPath}
+	}
+
+	for i := range pkgsPaths {
+		pkgPath := pkgsPaths[i]
+		// Add schema present in openAPI file for current package
+		if e.needOpenAPI {
+			if err := openapi.AddSchemaFromFile(filepath.Join(pkgPath, openAPIFileName)); err != nil {
+				return err
+			}
+		}
+
+		if !e.skipPkgPathPrint {
+			fmt.Fprintf(e.writer, "%s/\n", pkgPath)
+		}
+
+		err := e.cmdRunner.executeCmd(e.writer, pkgPath)
+		if err != nil {
+			return err
+		}
+
+		if i != len(pkgsPaths)-1 {
+			fmt.Fprint(e.writer, "\n")
+		}
+
+		// Delete schema present in openAPI file for current package
+		if e.needOpenAPI {
+			if err := openapi.DeleteSchemaInFile(filepath.Join(pkgPath, openAPIFileName)); err != nil {
+				return err
+			}
+		}
+	}
+	return nil
+}
+
 // parseFieldPath parse a flag value into a field path
 func parseFieldPath(path string) ([]string, error) {
 	// fixup '\.' so we don't split on it

cmd/config/internal/commands/util_test.go

@@ -0,0 +1,184 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package commands
+
+import (
+	"bytes"
+	"io"
+	"io/ioutil"
+	"os"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"sigs.k8s.io/kustomize/kyaml/errors"
+)
+
+func TestExecuteCmdOnPkgs(t *testing.T) {
+	var tests = []struct {
+		name        string
+		recurse     bool
+		pkgPath     string
+		needOpenAPI bool
+		errMsg      string
+		expectedOut string
+	}{
+		{
+			name:        "need_Krmfile_error",
+			recurse:     true,
+			needOpenAPI: true,
+			pkgPath:     "subpkg1/subdir1",
+			errMsg:      `unable to find "Krmfile" in package`,
+		},
+		{
+			name:        "Krmfile_not_needed_no_err",
+			recurse:     true,
+			needOpenAPI: false,
+			pkgPath:     "subpkg1/subdir1",
+			expectedOut: `${baseDir}/subpkg1/subdir1/
+`,
+		},
+		{
+			name:        "executeCmd_returns_error",
+			recurse:     true,
+			needOpenAPI: false,
+			pkgPath:     "subpkg4",
+			expectedOut: `${baseDir}/subpkg4/
+`,
+			errMsg: `this command returns an error if package has error.txt file`,
+		},
+		{
+			name:        "executeCmd_prints_pkgpaths",
+			recurse:     true,
+			needOpenAPI: false,
+			pkgPath:     "subpkg2",
+			expectedOut: `${baseDir}/subpkg2/
+
+${baseDir}/subpkg2/subpkg3/
+`,
+		},
+	}
+
+	dir, err := ioutil.TempDir("", "")
+	if !assert.NoError(t, err) {
+		t.FailNow()
+	}
+	defer os.RemoveAll(dir)
+	err = createTestDirStructure(dir)
+	if !assert.NoError(t, err) {
+		t.FailNow()
+	}
+
+	for i := range tests {
+		test := tests[i]
+		t.Run(test.name, func(t *testing.T) {
+			actual := &bytes.Buffer{}
+			r := &TestRunner{}
+			e := executeCmdOnPkgs{
+				needOpenAPI:        test.needOpenAPI,
+				writer:             actual,
+				rootPkgPath:        filepath.Join(dir, test.pkgPath),
+				recurseSubPackages: test.recurse,
+				cmdRunner:          r,
+			}
+			err := e.execute()
+			if test.errMsg == "" {
+				if !assert.NoError(t, err) {
+					t.FailNow()
+				}
+			} else {
+				if !assert.Error(t, err) {
+					t.FailNow()
+				}
+				if !assert.Contains(t, err.Error(), test.errMsg) {
+					t.FailNow()
+				}
+			}
+
+			// normalize path format for windows
+			actualNormalized := strings.Replace(
+				strings.Replace(actual.String(), "\\", "/", -1),
+				"//", "/", -1)
+
+			expected := strings.Replace(test.expectedOut, "${baseDir}", dir+"/", -1)
+			expectedNormalized := strings.Replace(
+				strings.Replace(expected, "\\", "/", -1),
+				"//", "/", -1)
+			if !assert.Equal(t, expectedNormalized, actualNormalized) {
+				t.FailNow()
+			}
+		})
+	}
+}
+
+func createTestDirStructure(dir string) error {
+	/*
+			Adds the folders to the input dir with following structure
+			dir
+			├── subpkg1
+			│   ├── Krmfile
+			│   └── subdir1
+		  ├── subpkg4
+		  │   ├── Krmfile
+		  │   └── error.txt
+			└── subpkg2
+		      ├── subpkg3
+		      │   ├── Krmfile
+		      │   └── subdir2
+			    └── Krmfile
+	*/
+	err := os.MkdirAll(filepath.Join(dir, "subpkg1/subdir1"), 0777|os.ModeDir)
+	if err != nil {
+		return err
+	}
+	err = os.MkdirAll(filepath.Join(dir, "subpkg2/subpkg3/subdir2"), 0777|os.ModeDir)
+	if err != nil {
+		return err
+	}
+	err = os.MkdirAll(filepath.Join(dir, "subpkg4"), 0777|os.ModeDir)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "subpkg1", "Krmfile"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "subpkg2", "Krmfile"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "subpkg2/subpkg3", "Krmfile"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "subpkg4", "error.txt"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "subpkg4", "Krmfile"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	err = ioutil.WriteFile(filepath.Join(dir, "Krmfile"), []byte(""), 0777)
+	if err != nil {
+		return err
+	}
+	return nil
+}
+
+type TestRunner struct{}
+
+func (r *TestRunner) executeCmd(w io.Writer, pkgPath string) error {
+	children, err := ioutil.ReadDir(pkgPath)
+	if err != nil {
+		return err
+	}
+	for _, child := range children {
+		if child.Name() == "error.txt" {
+			return errors.Errorf("this command returns an error if package has error.txt file")
+		}
+	}
+	return nil
+}

examples/zh/chart.md

@@ -1,4 +1,4 @@
-# 使用 kustomize 对 helm chart s进行修改
+# 使用 kustomize 对 helm charts 进行修改
 
 [last mile]: https://testingclouds.wordpress.com/2018/07/20/844/
 [stable chart]: https://github.com/helm/charts/tree/master/stable

functions/examples/application-cr/image/go.mod

@@ -5,6 +5,6 @@ go 1.14
 require (
 	k8s.io/apimachinery v0.18.3
 	sigs.k8s.io/application v0.8.2
-	sigs.k8s.io/kustomize/kyaml v0.6.1
+	sigs.k8s.io/kustomize/kyaml v0.7.1
 	sigs.k8s.io/yaml v1.2.0
 )

functions/examples/application-cr/image/go.sum

@@ -559,8 +559,8 @@ sigs.k8s.io/application v0.8.2 h1:XB7C33f7eW+1MbCJXoZa0+nP+R+S/VbAvYfCd3ufP1I=
 sigs.k8s.io/application v0.8.2/go.mod h1:Mv+ht9RE/QNtITYCzRbt3XTIN6t6so6cInmiyg6wOIg=
 sigs.k8s.io/controller-runtime v0.4.0 h1:wATM6/m+3w8lj8FXNaO6Fs/rq/vqoOjO1Q116Z9NPsg=
 sigs.k8s.io/controller-runtime v0.4.0/go.mod h1:ApC79lpY3PHW9xj/w9pj+lYkLgwAAUZwfXkME1Lajns=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.7.1 h1:Ih6SJPvfKYfZaIFWUa2YAyg/0ZSTpA3LFjR/hv7+8ao=
+sigs.k8s.io/kustomize/kyaml v0.7.1/go.mod h1:ne3F9JPhW2wrVaLslxBsEe6MQJQ9YK5rUutrdhBWXwI=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190525122527-15d366b2352e/go.mod h1:wWxsB5ozmmv/SG7nM11ayaAW51xMvak/t1r0CSlcokI=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190817042607-6149e4549fca/go.mod h1:IIgPezJWb76P0hotTxzDbWsMYB8APh18qZnxkomBpxA=
 sigs.k8s.io/structured-merge-diff v1.0.1-0.20191108220359-b1b620dd3f06 h1:zD2IemQ4LmOcAumeiyDWXKUI2SO0NYDe3H6QGvPOVgU=

functions/examples/injection-tshirt-sizes/image/go.mod

@@ -2,4 +2,4 @@ module sigs.k8s.io/kustomize/functions/examples/injection-tshirt-sizes
 
 go 1.14
 
-require sigs.k8s.io/kustomize/kyaml v0.6.1
+require sigs.k8s.io/kustomize/kyaml v0.7.1

functions/examples/injection-tshirt-sizes/image/go.sum

@@ -217,6 +217,8 @@ golang.org/x/net v0.0.0-20190522155817-f3200d17e092/go.mod h1:HSz+uSET+XFnRR8LxR
 golang.org/x/net v0.0.0-20190613194153-d28f0bde5980/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297 h1:k7pJ2yAPLPgbskkFdhRCsA77k2fySZ1zf2zCjvQCiIM=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9 h1:rjwSpXsdiK0dV8/Naq3kAw9ymfAeJIyd0upUIElB+lI=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
@@ -263,5 +265,5 @@ gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71 h1:Xe2gvTZUJpsvOWUnvmL/tmhVBZUmHSvLbMjRj6NUUKo=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.7.1 h1:Ih6SJPvfKYfZaIFWUa2YAyg/0ZSTpA3LFjR/hv7+8ao=
+sigs.k8s.io/kustomize/kyaml v0.7.1/go.mod h1:ne3F9JPhW2wrVaLslxBsEe6MQJQ9YK5rUutrdhBWXwI=

functions/examples/template-go-nginx/image/go.mod

@@ -2,4 +2,4 @@ module sigs.k8s.io/kustomize/functions/examples/template-go-nginx
 
 go 1.14
 
-require sigs.k8s.io/kustomize/kyaml v0.6.1
+require sigs.k8s.io/kustomize/kyaml v0.7.1

functions/examples/template-go-nginx/image/go.sum

@@ -218,6 +218,8 @@ golang.org/x/net v0.0.0-20190522155817-f3200d17e092/go.mod h1:HSz+uSET+XFnRR8LxR
 golang.org/x/net v0.0.0-20190613194153-d28f0bde5980/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297 h1:k7pJ2yAPLPgbskkFdhRCsA77k2fySZ1zf2zCjvQCiIM=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9 h1:rjwSpXsdiK0dV8/Naq3kAw9ymfAeJIyd0upUIElB+lI=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
@@ -264,5 +266,5 @@ gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71 h1:Xe2gvTZUJpsvOWUnvmL/tmhVBZUmHSvLbMjRj6NUUKo=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.7.1 h1:Ih6SJPvfKYfZaIFWUa2YAyg/0ZSTpA3LFjR/hv7+8ao=
+sigs.k8s.io/kustomize/kyaml v0.7.1/go.mod h1:ne3F9JPhW2wrVaLslxBsEe6MQJQ9YK5rUutrdhBWXwI=

functions/examples/validator-kubeval/image/go.mod

@@ -4,5 +4,5 @@ go 1.14
 
 require (
 	github.com/instrumenta/kubeval v0.0.0-20190918223246-8d013ec9fc56
-	sigs.k8s.io/kustomize/kyaml v0.6.1
+	sigs.k8s.io/kustomize/kyaml v0.7.1
 )

functions/examples/validator-kubeval/image/go.sum

@@ -244,6 +244,8 @@ golang.org/x/net v0.0.0-20190522155817-f3200d17e092/go.mod h1:HSz+uSET+XFnRR8LxR
 golang.org/x/net v0.0.0-20190613194153-d28f0bde5980/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297 h1:k7pJ2yAPLPgbskkFdhRCsA77k2fySZ1zf2zCjvQCiIM=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9 h1:rjwSpXsdiK0dV8/Naq3kAw9ymfAeJIyd0upUIElB+lI=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
@@ -294,7 +296,7 @@ gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71 h1:Xe2gvTZUJpsvOWUnvmL/tmhVBZUmHSvLbMjRj6NUUKo=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.7.1 h1:Ih6SJPvfKYfZaIFWUa2YAyg/0ZSTpA3LFjR/hv7+8ao=
+sigs.k8s.io/kustomize/kyaml v0.7.1/go.mod h1:ne3F9JPhW2wrVaLslxBsEe6MQJQ9YK5rUutrdhBWXwI=
 sigs.k8s.io/yaml v1.1.0 h1:4A07+ZFc2wgJwo8YNlQpr1rVlgUDlxXHhPJciaPY5gs=
 sigs.k8s.io/yaml v1.1.0/go.mod h1:UJmg0vDUVViEyp3mgSv9WPwZCDxu4rQW1olrI1uml+o=

functions/examples/validator-resource-requests/image/go.mod

@@ -2,4 +2,4 @@ module sigs.k8s.io/kustomize/functions/examples/validator-resource-requests
 
 go 1.14
 
-require sigs.k8s.io/kustomize/kyaml v0.6.1
+require sigs.k8s.io/kustomize/kyaml v0.7.1

functions/examples/validator-resource-requests/image/go.sum

@@ -211,6 +211,8 @@ golang.org/x/net v0.0.0-20190522155817-f3200d17e092/go.mod h1:HSz+uSET+XFnRR8LxR
 golang.org/x/net v0.0.0-20190613194153-d28f0bde5980/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297 h1:k7pJ2yAPLPgbskkFdhRCsA77k2fySZ1zf2zCjvQCiIM=
 golang.org/x/net v0.0.0-20190827160401-ba9fcec4b297/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9 h1:rjwSpXsdiK0dV8/Naq3kAw9ymfAeJIyd0upUIElB+lI=
+golang.org/x/net v0.0.0-20191004110552-13f9640d40b9/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
@@ -257,5 +259,5 @@ gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71 h1:Xe2gvTZUJpsvOWUnvmL/tmhVBZUmHSvLbMjRj6NUUKo=
 gopkg.in/yaml.v3 v3.0.0-20200121175148-a6ecf24a6d71/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
 honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
-sigs.k8s.io/kustomize/kyaml v0.6.1 h1:mwffj5vt3MPdbWV3fZnnwol8SO7sUoGdgejBlvseyak=
-sigs.k8s.io/kustomize/kyaml v0.6.1/go.mod h1:bEzbO5pN9OvlEeCLvFHo8Pu7SA26Herc2m60UeWZBdI=
+sigs.k8s.io/kustomize/kyaml v0.7.1 h1:Ih6SJPvfKYfZaIFWUa2YAyg/0ZSTpA3LFjR/hv7+8ao=
+sigs.k8s.io/kustomize/kyaml v0.7.1/go.mod h1:ne3F9JPhW2wrVaLslxBsEe6MQJQ9YK5rUutrdhBWXwI=

kustomize/go.mod

@@ -8,19 +8,15 @@ require (
 	github.com/spf13/cobra v1.0.0
 	github.com/spf13/pflag v1.0.5
 	k8s.io/client-go v0.17.3
-	sigs.k8s.io/kustomize/api v0.5.1
-	sigs.k8s.io/kustomize/cmd/config v0.5.0
+	sigs.k8s.io/kustomize/api v0.6.1
+	sigs.k8s.io/kustomize/cmd/config v0.8.1
 	sigs.k8s.io/yaml v1.2.0
 )
 
-replace (
-	sigs.k8s.io/kustomize/api v0.5.1 => ../api
-	sigs.k8s.io/kustomize/cmd/config v0.5.0 => ../cmd/config
-	sigs.k8s.io/kustomize/kyaml => ../kyaml
-)
-
 exclude (
 	github.com/russross/blackfriday v2.0.0+incompatible
 	sigs.k8s.io/kustomize/api v0.2.0
 	sigs.k8s.io/kustomize/cmd/config v0.2.0
 )
+
+replace sigs.k8s.io/kustomize/api v0.6.1 => ../api

kustomize/go.sum

@@ -358,6 +358,8 @@ github.com/modern-go/reflect2 v0.0.0-20180701023420-4b7aa43c6742/go.mod h1:bx2lN
 github.com/modern-go/reflect2 v1.0.1 h1:9f412s+6RmYXLWZSEzVVgPGK7C2PphHj5RJrvfx9AWI=
 github.com/modern-go/reflect2 v1.0.1/go.mod h1:bx2lNnkwVCuqBIxFjflWJWanXIb3RllmbCylyMrvgv0=
 github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00 h1:n6/2gBQ3RWajuToeY6ZtZTIKv2v7ThUy5KKusIT0yc0=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00/go.mod h1:Pm3mSP3c5uWn86xMLZ5Sa7JB9GsEZySvHYXCTK4E9q4=
 github.com/mozilla/tls-observatory v0.0.0-20190404164649-a3c1b6cfecfd/go.mod h1:SrKMQvPiws7F7iqYp8/TX+IhxCYhzr6N/1yb8cwHsGk=
 github.com/munnerz/goautoneg v0.0.0-20120707110453-a547fc61f48d/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
 github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
@@ -627,6 +629,7 @@ golang.org/x/tools v0.0.0-20190910044552-dd2b5c81c578/go.mod h1:b+2E5dAYhXwXZwtn
 golang.org/x/tools v0.0.0-20190920225731-5eefd052ad72/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20190930201159-7c411dea38b0/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/tools v0.0.0-20191010075000-0337d82405ff/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
+golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
 golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
 golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898 h1:/atklqdjdhuosWIl6AIbOeHJjicWYPqR9bpxqxYG2pA=
 golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
@@ -742,12 +745,18 @@ modernc.org/xc v1.0.0/go.mod h1:mRNCo0bvLjGhHO9WsyuKVU4q0ceiDDDoEeWDJHrNx8I=
 mvdan.cc/interfacer v0.0.0-20180901003855-c20040233aed/go.mod h1:Xkxe497xwlCKkIaQYRfC7CSLworTXY9RMqwhhCm+8Nc=
 mvdan.cc/lint v0.0.0-20170908181259-adc824a0674b/go.mod h1:2odslEg/xrtNQqCYg2/jCoyKnw3vv5biOc3JnIcYfL4=
 mvdan.cc/unparam v0.0.0-20190720180237-d51796306d8f/go.mod h1:4G1h5nDURzA3bwVMZIVpwbkw+04kSxk3rAtzlimaUJw=
-sigs.k8s.io/cli-utils v0.19.0 h1:lAoR5okhSV/dIusodaQp5VbDpHMcKnvjqKYHU+AB3a4=
-sigs.k8s.io/cli-utils v0.19.0/go.mod h1:B7KdqkSkHNIUn3cFbaR4aKUZMKtr+Benboi1w/HW/Fg=
+sigs.k8s.io/cli-utils v0.20.1 h1:S3IM4Rmely9oWNAeytx46PhngTwdRxsJ4ixtoGWPc3o=
+sigs.k8s.io/cli-utils v0.20.1/go.mod h1:fQkEMmLXduMNmUf1+dgQ5GRJa4OrrLMw3qzAN8YXAU8=
+sigs.k8s.io/cli-utils v0.20.2 h1:jNMu4ExtvFXlmKqZMDJqySqK55vGtVRqoLht6eIMffw=
+sigs.k8s.io/cli-utils v0.20.2/go.mod h1:uT5cVxMrOoRplL8umtrJx5R51ZWsIKD7lQfPtot80uA=
 sigs.k8s.io/controller-runtime v0.4.0 h1:wATM6/m+3w8lj8FXNaO6Fs/rq/vqoOjO1Q116Z9NPsg=
 sigs.k8s.io/controller-runtime v0.4.0/go.mod h1:ApC79lpY3PHW9xj/w9pj+lYkLgwAAUZwfXkME1Lajns=
 sigs.k8s.io/kustomize v2.0.3+incompatible h1:JUufWFNlI44MdtnjUqVnvh29rR37PQFzPbLXqhyOyX0=
 sigs.k8s.io/kustomize v2.0.3+incompatible/go.mod h1:MkjgH3RdOWrievjo6c9T245dYlB5QeXV4WCbnt/PEpU=
+sigs.k8s.io/kustomize/kyaml v0.8.0 h1:/MqPML99XAm2pbrD/eTpePh5rnU5bpnuTPqb29LpSz4=
+sigs.k8s.io/kustomize/kyaml v0.8.0/go.mod h1:UTm64bSWVdBUA8EQoYCxVOaBQxUdIOr5LKWxA4GNbkw=
+sigs.k8s.io/kustomize/kyaml v0.8.1 h1:5GRanVGU6+iq3ERTiQD9VIfyGByFVB4z4GthP8NkRYE=
+sigs.k8s.io/kustomize/kyaml v0.8.1/go.mod h1:UTm64bSWVdBUA8EQoYCxVOaBQxUdIOr5LKWxA4GNbkw=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190525122527-15d366b2352e/go.mod h1:wWxsB5ozmmv/SG7nM11ayaAW51xMvak/t1r0CSlcokI=
 sigs.k8s.io/structured-merge-diff v0.0.0-20190817042607-6149e4549fca/go.mod h1:IIgPezJWb76P0hotTxzDbWsMYB8APh18qZnxkomBpxA=
 sigs.k8s.io/structured-merge-diff v1.0.1-0.20191108220359-b1b620dd3f06/go.mod h1:/ULNhyfzRopfcjskuui0cTITekDduZ7ycKN3oUT9R18=

kustomize/internal/commands/edit/add/configmap.go

@@ -81,6 +81,11 @@ func newCmdAddConfigMap(
 		"from-env-file",
 		"",
 		"Specify the path to a file to read lines of key=val pairs to create a configmap (i.e. a Docker .env file).")
+	cmd.Flags().BoolVar(
+		&flags.DisableNameSuffixHash,
+		"disableNameSuffixHash",
+		false,
+		"Disable the name suffix for the configmap")
 
 	return cmd
 }
@@ -126,4 +131,9 @@ func mergeFlagsIntoCmArgs(args *types.ConfigMapArgs, flags flagsAndArgs) {
 		args.EnvSources = append(
 			args.EnvSources, flags.EnvFileSource)
 	}
+	if flags.DisableNameSuffixHash {
+		args.Options = &types.GeneratorOptions{
+			DisableNameSuffixHash: true,
+		}
+	}
 }

kustomize/internal/commands/edit/add/flagsandargs.go

@@ -26,6 +26,8 @@ type flagsAndArgs struct {
 	Type string
 	// Namespace of secret
 	Namespace string
+	// Disable name suffix
+	DisableNameSuffixHash bool
 }
 
 // Validate validates required fields are set to support structured generation.

kustomize/internal/commands/edit/add/secret.go

@@ -91,6 +91,11 @@ func newCmdAddSecret(
 		"namespace",
 		"",
 		"Specify the namespace of the secret")
+	cmd.Flags().BoolVar(
+		&flags.DisableNameSuffixHash,
+		"disableNameSuffixHash",
+		false,
+		"Disable the name suffix for the secret")
 
 	return cmd
 }
@@ -139,4 +144,9 @@ func mergeFlagsIntoGeneratorArgs(args *types.GeneratorArgs, flags flagsAndArgs)
 		args.EnvSources = append(
 			args.EnvSources, flags.EnvFileSource)
 	}
+	if flags.DisableNameSuffixHash {
+		args.Options = &types.GeneratorOptions{
+			DisableNameSuffixHash: true,
+		}
+	}
 }

kustomize/internal/commands/edit/add/secret_test.go

@@ -114,3 +114,14 @@ func TestMergeFlagsIntoSecretArgs_EnvSource(t *testing.T) {
 		t.Fatalf("expected env2")
 	}
 }
+
+func TestMergeFlagsIntoSecretArgs_DisableNameSuffixHash(t *testing.T) {
+	k := &types.Kustomization{}
+	args := findOrMakeSecretArgs(k, "foo", "bar", "forbidden")
+	mergeFlagsIntoGeneratorArgs(
+		&args.GeneratorArgs,
+		flagsAndArgs{DisableNameSuffixHash: true})
+	if k.SecretGenerator[0].Options.DisableNameSuffixHash != true {
+		t.Fatalf("expected true")
+	}
+}

kustomize/internal/commands/edit/fix/fix.go

@@ -39,5 +39,6 @@ func RunFix(fSys filesys.FileSystem) error {
 		return err
 	}
 
+	m.FixKustomizationPreMarshalling()
 	return mf.Write(m)
 }

kustomize/internal/commands/edit/fix/fix_test.go

@@ -7,6 +7,7 @@ import (
 	"strings"
 	"testing"
 
+	"github.com/google/go-cmp/cmp"
 	"sigs.k8s.io/kustomize/api/filesys"
 	testutils_test "sigs.k8s.io/kustomize/kustomize/v3/internal/commands/testutils"
 )
@@ -31,3 +32,104 @@ func TestFix(t *testing.T) {
 		t.Errorf("expected kind in kustomization")
 	}
 }
+
+func TestFixOutdatedPatchesFieldTitle(t *testing.T) {
+	kustomizationContentWithOutdatedPatchesFieldTitle := []byte(`
+patchesJson6902:
+- path: patch1.yaml
+  target:
+    kind: Service
+- path: patch2.yaml
+  target:
+    group: apps
+    kind: Deployment
+    version: v1
+`)
+
+	expected := []byte(`
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+patches:
+- path: patch1.yaml
+  target:
+    kind: Service
+- path: patch2.yaml
+  target:
+    group: apps
+    kind: Deployment
+    version: v1
+`)
+	fSys := filesys.MakeFsInMemory()
+	testutils_test.WriteTestKustomizationWith(fSys, kustomizationContentWithOutdatedPatchesFieldTitle)
+	cmd := NewCmdFix(fSys)
+	err := cmd.RunE(cmd, nil)
+	if err != nil {
+		t.Errorf("unexpected cmd error: %v", err)
+	}
+	content, err := testutils_test.ReadTestKustomization(fSys)
+	if err != nil {
+		t.Errorf("unexpected read error: %v", err)
+	}
+	if !strings.Contains(string(content), "apiVersion: ") {
+		t.Errorf("expected apiVersion in kustomization")
+	}
+	if !strings.Contains(string(content), "kind: Kustomization") {
+		t.Errorf("expected kind in kustomization")
+	}
+
+	if diff := cmp.Diff(expected, content); diff != "" {
+		t.Errorf("Mismatch (-expected, +actual):\n%s", diff)
+	}
+}
+
+func TestRenameAndKeepOutdatedPatchesField(t *testing.T) {
+	kustomizationContentWithOutdatedPatchesFieldTitle := []byte(`
+patchesJson6902:
+- path: patch1.yaml
+  target:
+    kind: Deployment
+patches:
+- path: patch2.yaml
+  target:
+    kind: Deployment
+- path: patch3.yaml
+  target:
+    kind: Service
+`)
+
+	expected := []byte(`
+patches:
+- path: patch2.yaml
+  target:
+    kind: Deployment
+- path: patch3.yaml
+  target:
+    kind: Service
+- path: patch1.yaml
+  target:
+    kind: Deployment
+apiVersion: kustomize.config.k8s.io/v1beta1
+kind: Kustomization
+`)
+	fSys := filesys.MakeFsInMemory()
+	testutils_test.WriteTestKustomizationWith(fSys, kustomizationContentWithOutdatedPatchesFieldTitle)
+	cmd := NewCmdFix(fSys)
+	err := cmd.RunE(cmd, nil)
+	if err != nil {
+		t.Errorf("unexpected cmd error: %v", err)
+	}
+	content, err := testutils_test.ReadTestKustomization(fSys)
+	if err != nil {
+		t.Errorf("unexpected read error: %v", err)
+	}
+	if !strings.Contains(string(content), "apiVersion: ") {
+		t.Errorf("expected apiVersion in kustomization")
+	}
+	if !strings.Contains(string(content), "kind: Kustomization") {
+		t.Errorf("expected kind in kustomization")
+	}
+
+	if diff := cmp.Diff(expected, content); diff != "" {
+		t.Errorf("Mismatch (-expected, +actual):\n%s", diff)
+	}
+}

kustomize/internal/commands/edit/set/setimage_test.go

@@ -145,6 +145,47 @@ func TestSetImage(t *testing.T) {
 					"  newTag: my-tag2",
 				}},
 		},
+		{
+			description: "override file with patch",
+			given: given{
+				args: []string{"image1=foo.bar.foo:8800/foo/image1:foo-bar"},
+				infileImages: []string{
+					"images:",
+					"- name: image1",
+					"  newName: my-image1",
+					"  newTag: my-tag",
+					"- name: image2",
+					"  newName: my-image2",
+					"  newTag: my-tag2",
+					"patchesJson6902:",
+					"- patch: |-",
+					"    - op: remove",
+					"      path: /spec/selector",
+					"  target:",
+					"    kind: Service",
+					"    name: foo",
+					"    version: v1",
+				},
+			},
+			expected: expected{
+				fileOutput: []string{
+					"images:",
+					"- name: image1",
+					"  newName: foo.bar.foo:8800/foo/image1",
+					"  newTag: foo-bar",
+					"- name: image2",
+					"  newName: my-image2",
+					"  newTag: my-tag2",
+					"patchesJson6902:",
+					"- patch: |-",
+					"    - op: remove",
+					"      path: /spec/selector",
+					"  target:",
+					"    kind: Service",
+					"    name: foo",
+					"    version: v1",
+				}},
+		},
 		{
 			description: "override new tag and new name with just a new tag",
 			given: given{

kustomize/internal/commands/kustfile/kustomizationfile.go

@@ -170,7 +170,6 @@ func (mf *kustomizationFile) Write(kustomization *types.Kustomization) error {
 	if kustomization == nil {
 		return errors.New("util: kustomization file arg is nil")
 	}
-	kustomization.FixKustomizationPreMarshalling()
 	data, err := mf.marshal(kustomization)
 	if err != nil {
 		return err

kustomize/internal/commands/kustfile/kustomizationfile_test.go

@@ -338,103 +338,6 @@ kind: Kustomization
 	}
 }
 
-func TestRenameAndKeepOutdatedPatchesField(t *testing.T) {
-	kustomizationContentWithOutdatedPatchesFieldTitle := []byte(`
-patchesJson6902:
-- path: patch1.yaml
-  target:
-    kind: Deployment
-patches:
-- path: patch2.yaml
-  target:
-    kind: Deployment
-- path: patch3.yaml
-  target:
-    kind: Service
-`)
-
-	expected := []byte(`
-patches:
-- path: patch2.yaml
-  target:
-    kind: Deployment
-- path: patch3.yaml
-  target:
-    kind: Service
-- path: patch1.yaml
-  target:
-    kind: Deployment
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-`)
-	fSys := filesys.MakeFsInMemory()
-	testutils_test.WriteTestKustomizationWith(fSys, kustomizationContentWithOutdatedPatchesFieldTitle)
-	mf, err := NewKustomizationFile(fSys)
-	if err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-
-	kustomization, err := mf.Read()
-	if err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-	if err = mf.Write(kustomization); err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-	bytes, _ := fSys.ReadFile(mf.path)
-
-	if diff := cmp.Diff(expected, bytes); diff != "" {
-		t.Errorf("Mismatch (-expected, +actual):\n%s", diff)
-	}
-}
-
-func TestFixOutdatedPatchesFieldTitle(t *testing.T) {
-	kustomizationContentWithOutdatedPatchesFieldTitle := []byte(`
-patchesJson6902:
-- path: patch1.yaml
-  target:
-    kind: Service
-- path: patch2.yaml
-  target:
-    group: apps
-    kind: Deployment
-    version: v1
-`)
-
-	expected := []byte(`
-apiVersion: kustomize.config.k8s.io/v1beta1
-kind: Kustomization
-patches:
-- path: patch1.yaml
-  target:
-    kind: Service
-- path: patch2.yaml
-  target:
-    group: apps
-    kind: Deployment
-    version: v1
-`)
-	fSys := filesys.MakeFsInMemory()
-	testutils_test.WriteTestKustomizationWith(fSys, kustomizationContentWithOutdatedPatchesFieldTitle)
-	mf, err := NewKustomizationFile(fSys)
-	if err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-
-	kustomization, err := mf.Read()
-	if err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-	if err = mf.Write(kustomization); err != nil {
-		t.Fatalf("Unexpected Error: %v", err)
-	}
-	bytes, _ := fSys.ReadFile(mf.path)
-
-	if diff := cmp.Diff(expected, bytes); diff != "" {
-		t.Errorf("Mismatch (-expected, +actual):\n%s", diff)
-	}
-}
-
 func TestUnknownFieldInKustomization(t *testing.T) {
 	kContent := []byte(`
 foo:

kyaml/ext/ext.go

@@ -0,0 +1,10 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package ext
+
+// GetIgnoreFileName returns the name for ignore files in
+// packages. It can be overridden by tools using this library.
+var GetIgnoreFileName = func() string {
+	return ".krmignore"
+}

kyaml/fn/runtime/container/container.go

@@ -154,13 +154,17 @@ func (c *Filter) setupExec() {
 
 // getArgs returns the command + args to run to spawn the container
 func (c *Filter) getCommand() (string, []string) {
+	network := runtimeutil.NetworkNameNone
+	if c.ContainerSpec.Network {
+		network = runtimeutil.NetworkNameHost
+	}
 	// run the container using docker.  this is simpler than using the docker
 	// libraries, and ensures things like auth work the same as if the container
 	// was run from the cli.
 	args := []string{"run",
 		"--rm",                                              // delete the container afterward
 		"-i", "-a", "STDIN", "-a", "STDOUT", "-a", "STDERR", // attach stdin, stdout, stderr
-		"--network", string(c.ContainerSpec.Network.Name),
+		"--network", string(network),
 
 		// added security options
 		"--user", c.User.String(),
@@ -186,10 +190,5 @@ func NewContainer(spec runtimeutil.ContainerSpec) Filter {
 		f.ContainerSpec.User = runtimeutil.UserNobody
 	}
 
-	// default network name is none
-	if f.ContainerSpec.Network.Name == "" {
-		f.ContainerSpec.Network.Name = runtimeutil.NetworkNameNone
-	}
-
 	return f
 }

kyaml/fn/runtime/container/container_test.go

@@ -55,17 +55,15 @@ metadata:
 				"run",
 				"--rm",
 				"-i", "-a", "STDIN", "-a", "STDOUT", "-a", "STDERR",
-				"--network", "test-1",
+				"--network", "host",
 				"--user", "nobody",
 				"--security-opt=no-new-privileges",
 			},
 			instance: NewContainer(
 				runtimeutil.ContainerSpec{
-					Image: "example.com:version",
-					Network: runtimeutil.ContainerNetwork{
-						Name: "test-1",
-					},
-					User: "nobody",
+					Image:   "example.com:version",
+					Network: true,
+					User:    "nobody",
 				},
 			),
 		},

kyaml/fn/runtime/runtimeutil/functiontypes.go

@@ -38,8 +38,8 @@ const (
 type ContainerNetworkName string
 
 const (
-	NetworkNameNone  ContainerNetworkName = "none"
-	NetworkNameEmpty ContainerNetworkName = ""
+	NetworkNameNone ContainerNetworkName = "none"
+	NetworkNameHost ContainerNetworkName = "host"
 )
 const defaultEnvValue string = "true"
 
@@ -166,7 +166,7 @@ type ContainerSpec struct {
 	Image string `json:"image,omitempty" yaml:"image,omitempty"`
 
 	// Network defines network specific configuration
-	Network ContainerNetwork `json:"network,omitempty" yaml:"network,omitempty"`
+	Network bool `json:"network,omitempty" yaml:"network,omitempty"`
 
 	// Mounts are the storage or directories to mount into the container
 	StorageMounts []StorageMount `json:"mounts,omitempty" yaml:"mounts,omitempty"`
@@ -178,15 +178,6 @@ type ContainerSpec struct {
 	Env []string `json:"envs,omitempty" yaml:"envs,omitempty"`
 }
 
-// ContainerNetwork
-type ContainerNetwork struct {
-	// Required specifies that function requires a network
-	Required bool `json:"required,omitempty" yaml:"required,omitempty"`
-
-	// Name is the name of the network to use from a container
-	Name ContainerNetworkName `json:"name,omitempty" yaml:"name,omitempty"`
-}
-
 // StarlarkSpec defines how to run a function as a starlark program
 type StarlarkSpec struct {
 	Name string `json:"name,omitempty" yaml:"name,omitempty"`
@@ -237,7 +228,6 @@ func GetFunctionSpec(n *yaml.RNode) *FunctionSpec {
 	}
 
 	if fn := getFunctionSpecFromAnnotation(n, meta); fn != nil {
-		fn.Container.Network.Name = NetworkNameEmpty
 		fn.StorageMounts = []StorageMount{}
 		return fn
 	}

kyaml/fn/runtime/runtimeutil/runtimeutil_test.go

@@ -1208,14 +1208,12 @@ metadata:
     config.kubernetes.io/function: |-
       container:
         image: foo:v1.0.0
-        network:
-          required: true
+        network: true
 `,
 			expectedFn: `
 container:
     image: foo:v1.0.0
-    network:
-        required: true
+    network: true
 `,
 		},
 
@@ -1324,8 +1322,7 @@ metadata:
   configFn:
     container:
       image: gcr.io/kustomize-functions/example-tshirt:v0.1.0
-      network:
-        required: true
+      network: true
 `,
 			required: true,
 		},
@@ -1337,8 +1334,7 @@ metadata:
   configFn:
     container:
       image: gcr.io/kustomize-functions/example-tshirt:v0.1.0
-      network:
-        required: false
+      network: false
 `,
 			required: false,
 		},
@@ -1363,8 +1359,7 @@ metadata:
     config.kubernetes.io/function: |
       container:
         image: gcr.io/kustomize-functions/example-tshirt:v0.1.0
-        network:
-          required: true
+        network: true
 `,
 			required: true,
 		},
@@ -1376,7 +1371,7 @@ metadata:
 			return
 		}
 		fn := GetFunctionSpec(cfg)
-		assert.Equal(t, tc.required, fn.Container.Network.Required)
+		assert.Equal(t, tc.required, fn.Container.Network)
 	}
 }
 

kyaml/go.mod

@@ -8,6 +8,7 @@ require (
 	github.com/go-openapi/spec v0.19.5
 	github.com/go-openapi/strfmt v0.19.5
 	github.com/go-openapi/validate v0.19.8
+	github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00
 	github.com/qri-io/starlib v0.4.2-0.20200213133954-ff2e8cd5ef8d
 	github.com/sergi/go-diff v1.1.0
 	github.com/spf13/cobra v1.0.0

kyaml/go.sum

@@ -145,6 +145,8 @@ github.com/mitchellh/go-homedir v1.1.0/go.mod h1:SfyaCUpYCn1Vlf4IUYiD9fPX4A5wJrk
 github.com/mitchellh/mapstructure v1.1.2 h1:fmNYVwqnSfB9mZU6OS2O6GsXM+wcskZDuKQzvN1EDeE=
 github.com/mitchellh/mapstructure v1.1.2/go.mod h1:FVVH3fgwuzCH5S8UJGiWEs2h04kUh9fWfEaFds41c1Y=
 github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00 h1:n6/2gBQ3RWajuToeY6ZtZTIKv2v7ThUy5KKusIT0yc0=
+github.com/monochromegane/go-gitignore v0.0.0-20200626010858-205db1a8cc00/go.mod h1:Pm3mSP3c5uWn86xMLZ5Sa7JB9GsEZySvHYXCTK4E9q4=
 github.com/mwitkow/go-conntrack v0.0.0-20161129095857-cc309e4a2223/go.mod h1:qRWi+5nqEBWmkhHvq77mSJWrCKwh8bxhgT7d/eI7P4U=
 github.com/oklog/ulid v1.3.1/go.mod h1:CirwcVhetQ6Lv90oh/F+FBtV6XMibvdAFo93nm5qn4U=
 github.com/paulmach/orb v0.1.3/go.mod h1:VFlX/8C+IQ1p6FTRRKzKoOPJnvEtA5G0Veuqwbu//Vk=

kyaml/kio/ignorefilesmatcher.go

@@ -0,0 +1,100 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package kio
+
+import (
+	"os"
+	"path/filepath"
+	"strings"
+
+	"github.com/monochromegane/go-gitignore"
+	"sigs.k8s.io/kustomize/kyaml/ext"
+)
+
+// ignoreFilesMatcher handles `.krmignore` files, which allows for ignoring
+// files or folders in a package. The format of this file is a subset of the
+// gitignore format, with recursive patterns (like a/**/c) not supported. If a
+// file or folder matches any of the patterns in the .krmignore file for the
+// package, it will be excluded.
+//
+// It works as follows:
+//
+// * It will look for .krmignore file in the top folder and on the top level
+//   of any subpackages. Subpackages are defined by the presence of a Krmfile
+//   in the folder.
+// * `.krmignore` files only cover files and folders for the package in which
+//   it is defined. So ignore patterns defined in a parent package does not
+//   affect which files are ignored from a subpackage.
+// * An ignore pattern can not ignore a subpackage. So even if the parent
+//   package contains a pattern that ignores the directory foo, if foo is a
+//   subpackage, it will still be included if the IncludeSubpackages property
+//   is set to true
+type ignoreFilesMatcher struct {
+	matchers []matcher
+}
+
+// readIgnoreFile checks whether there is a .krmignore file in the path, and
+// if it is, reads it in and turns it into a matcher. If we can't find a file,
+// we just add a matcher that match nothing.
+func (i *ignoreFilesMatcher) readIgnoreFile(path string) error {
+	i.verifyPath(path)
+	m, err := gitignore.NewGitIgnore(filepath.Join(path, ext.GetIgnoreFileName()))
+	if err != nil {
+		if os.IsNotExist(err) {
+			i.matchers = append(i.matchers, matcher{
+				matcher:  gitignore.DummyIgnoreMatcher(false),
+				basePath: path,
+			})
+			return nil
+		}
+		return err
+	}
+	i.matchers = append(i.matchers, matcher{
+		matcher:  m,
+		basePath: path,
+	})
+	return nil
+}
+
+// verifyPath checks whether the top matcher on the stack
+// is correct for the provided filepath. Matchers are removed once
+// we encounter a filepath that is not a subpath of the basepath for
+// the matcher.
+func (i *ignoreFilesMatcher) verifyPath(path string) {
+	for j := len(i.matchers) - 1; j >= 0; j-- {
+		matcher := i.matchers[j]
+		if strings.HasPrefix(path, matcher.basePath) || path == matcher.basePath {
+			i.matchers = i.matchers[:j+1]
+			return
+		}
+	}
+}
+
+// matchFile checks whether the file given by the provided path matches
+// any of the patterns in the .krmignore file for the package.
+func (i *ignoreFilesMatcher) matchFile(path string) bool {
+	if len(i.matchers) == 0 {
+		return false
+	}
+	i.verifyPath(filepath.Dir(path))
+	return i.matchers[len(i.matchers)-1].matcher.Match(path, false)
+}
+
+// matchFile checks whether the directory given by the provided path matches
+// any of the patterns in the .krmignore file for the package.
+func (i *ignoreFilesMatcher) matchDir(path string) bool {
+	if len(i.matchers) == 0 {
+		return false
+	}
+	i.verifyPath(path)
+	return i.matchers[len(i.matchers)-1].matcher.Match(path, true)
+}
+
+// matcher wraps the gitignore matcher and the path to the folder
+// where the file was found.
+type matcher struct {
+	matcher gitignore.IgnoreMatcher
+
+	basePath string
+}

kyaml/kio/ignorefilesmatcher_test.go

@@ -0,0 +1,249 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package kio
+
+import (
+	"io/ioutil"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+)
+
+func TestIgnoreFilesMatcher_readIgnoreFile(t *testing.T) {
+	testCases := []struct {
+		name            string
+		writeIgnoreFile bool
+		isMatch         bool
+	}{
+		{
+			name:            "has .krmignore file",
+			writeIgnoreFile: true,
+			isMatch:         true,
+		},
+		{
+			name:            "no .krmignore file",
+			writeIgnoreFile: false,
+			isMatch:         false,
+		},
+	}
+
+	for i := range testCases {
+		test := testCases[i]
+		t.Run(test.name, func(t *testing.T) {
+			dir, err := ioutil.TempDir("", "kyaml-test")
+			if !assert.NoError(t, err) {
+				assert.FailNow(t, err.Error())
+			}
+
+			if test.writeIgnoreFile {
+				ignoreFilePath := filepath.Join(dir, ".krmignore")
+				err = ioutil.WriteFile(ignoreFilePath, []byte(`
+testfile.yaml
+`), 0600)
+				if !assert.NoError(t, err) {
+					assert.FailNow(t, err.Error())
+				}
+			}
+			testFilePath := filepath.Join(dir, "testfile.yaml")
+			err = ioutil.WriteFile(testFilePath, []byte{}, 0600)
+			if !assert.NoError(t, err) {
+				assert.FailNow(t, err.Error())
+			}
+
+			ignoreFilesMatcher := ignoreFilesMatcher{}
+			err = ignoreFilesMatcher.readIgnoreFile(dir)
+			if !assert.NoError(t, err) {
+				t.FailNow()
+			}
+			assert.Equal(t, test.isMatch, ignoreFilesMatcher.matchFile(testFilePath))
+		})
+	}
+}
+
+var (
+	readFileA = []byte(`
+a: a
+---
+c: c
+`)
+	readFileB = []byte(`
+b: b
+`)
+)
+
+func TestLocalPackageReader_Read_ignoreFile(t *testing.T) {
+	testCases := []struct {
+		name        string
+		directories []string
+		files       map[string][]byte
+		expected    []string
+	}{
+		{
+			name: "ignore file",
+			directories: []string{
+				filepath.Join("a", "b"),
+				filepath.Join("a", "c"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):               {},
+				filepath.Join("a", "b", "a_test.yaml"): readFileA,
+				filepath.Join("a", "c", "c_test.yaml"): readFileB,
+				filepath.Join(".krmignore"): []byte(`
+a/c/c_test.yaml
+`,
+				),
+			},
+			expected: []string{
+				`a: a`,
+				`c: c`,
+			},
+		},
+		{
+			name: "ignore folder",
+			directories: []string{
+				filepath.Join("a", "b"),
+				filepath.Join("a", "c"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):               {},
+				filepath.Join("a", "b", "a_test.yaml"): readFileA,
+				filepath.Join("a", "c", "c_test.yaml"): readFileB,
+				filepath.Join(".krmignore"): []byte(`
+a/c
+`,
+				),
+			},
+			expected: []string{
+				`a: a`,
+				`c: c`,
+			},
+		},
+		{
+			name: "krmignore file in subpackage",
+			directories: []string{
+				filepath.Join("a", "c"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):               {},
+				filepath.Join("a", "c", "a_test.yaml"): readFileA,
+				filepath.Join("a", "c", "c_test.yaml"): readFileB,
+				filepath.Join(".krmignore"): []byte(`
+d/e/f.yaml
+`,
+				),
+				filepath.Join("a", "c", "pkgFile"): {},
+				filepath.Join("a", "c", ".krmignore"): []byte(`
+a_test.yaml
+`),
+			},
+			expected: []string{
+				`b: b`,
+			},
+		},
+		{
+			name: "krmignore files does not affect subpackages",
+			directories: []string{
+				filepath.Join("a", "c"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):               {},
+				filepath.Join("a", "c", "a_test.yaml"): readFileA,
+				filepath.Join("a", "c", "c_test.yaml"): readFileB,
+				filepath.Join(".krmignore"): []byte(`
+a/c/c_test.yaml
+`,
+				),
+				filepath.Join("a", "c", "pkgFile"): {},
+				filepath.Join("a", "c", ".krmignore"): []byte(`
+a_test.yaml
+`),
+			},
+			expected: []string{
+				`b: b`,
+			},
+		},
+		{
+			name: "handles a combination of packages and directories",
+			directories: []string{
+				filepath.Join("a"),
+				filepath.Join("d", "e"),
+				filepath.Join("f"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):                 {},
+				filepath.Join("d", "pkgFile"):            {},
+				filepath.Join("d", "e", "pkgFile"):       {},
+				filepath.Join("f", "pkgFile"):            {},
+				filepath.Join("manifest.yaml"):           []byte(`root: root`),
+				filepath.Join("a", "manifest.yaml"):      []byte(`a: a`),
+				filepath.Join("d", "manifest.yaml"):      []byte(`d: d`),
+				filepath.Join("d", "e", "manifest.yaml"): []byte(`e: e`),
+				filepath.Join("f", "manifest.yaml"):      []byte(`f: f`),
+				filepath.Join("d", ".krmignore"): []byte(`
+manifest.yaml
+`),
+			},
+			expected: []string{
+				`a: a`,
+				`e: e`,
+				`f: f`,
+				`root: root`,
+			},
+		},
+		{
+			name: "ignore file can exclude subpackages",
+			directories: []string{
+				filepath.Join("a"),
+			},
+			files: map[string][]byte{
+				filepath.Join("pkgFile"):            {},
+				filepath.Join("a", "pkgFile"):       {},
+				filepath.Join("manifest.yaml"):      []byte(`root: root`),
+				filepath.Join("a", "manifest.yaml"): []byte(`a: a`),
+				filepath.Join(".krmignore"): []byte(`
+a
+`),
+			},
+			expected: []string{
+				`root: root`,
+			},
+		},
+	}
+
+	for i := range testCases {
+		test := testCases[i]
+		t.Run(test.name, func(t *testing.T) {
+			s := SetupDirectories(t, test.directories...)
+			defer s.Clean()
+			for path, content := range test.files {
+				s.WriteFile(t, path, content)
+			}
+
+			// empty path
+			rfr := LocalPackageReader{
+				PackagePath:           s.Root,
+				IncludeSubpackages:    true,
+				PackageFileName:       "pkgFile",
+				OmitReaderAnnotations: true,
+			}
+			nodes, err := rfr.Read()
+			if !assert.NoError(t, err) {
+				assert.FailNow(t, err.Error())
+			}
+
+			if !assert.Len(t, nodes, len(test.expected)) {
+				assert.FailNow(t, "wrong number items")
+			}
+
+			for i, node := range nodes {
+				val, err := node.String()
+				assert.NoError(t, err)
+				want := strings.ReplaceAll(test.expected[i], "${SEP}", string(filepath.Separator))
+				assert.Equal(t, strings.TrimSpace(want), strings.TrimSpace(val))
+			}
+		})
+	}
+}

kyaml/kio/pkgio_reader.go

@@ -80,6 +80,7 @@ func (r *LocalPackageReadWriter) Read() ([]*yaml.RNode, error) {
 		IncludeSubpackages:  r.IncludeSubpackages,
 		ErrorIfNonResources: r.ErrorIfNonResources,
 		SetAnnotations:      r.SetAnnotations,
+		PackageFileName:     r.PackageFileName,
 	}.Read()
 	if err != nil {
 		return nil, errors.Wrap(err)
@@ -184,8 +185,13 @@ func (r LocalPackageReader) Read() ([]*yaml.RNode, error) {
 
 	var operand ResourceNodeSlice
 	var pathRelativeTo string
-	r.PackagePath = filepath.Clean(r.PackagePath)
-	err := filepath.Walk(r.PackagePath, func(
+	var err error
+	ignoreFilesMatcher := &ignoreFilesMatcher{}
+	r.PackagePath, err = filepath.Abs(r.PackagePath)
+	if err != nil {
+		return nil, errors.Wrap(err)
+	}
+	err = filepath.Walk(r.PackagePath, func(
 		path string, info os.FileInfo, err error) error {
 		if err != nil {
 			return errors.Wrap(err)
@@ -194,9 +200,10 @@ func (r LocalPackageReader) Read() ([]*yaml.RNode, error) {
 		// is this the user specified path?
 		if path == r.PackagePath {
 			if info.IsDir() {
-				// skip the root package directory
+				// skip the root package directory, but check for a
+				// .krmignore file first.
 				pathRelativeTo = r.PackagePath
-				return nil
+				return ignoreFilesMatcher.readIgnoreFile(path)
 			}
 
 			// user specified path is a file rather than a directory.
@@ -206,9 +213,9 @@ func (r LocalPackageReader) Read() ([]*yaml.RNode, error) {
 
 		// check if we should skip the directory or file
 		if info.IsDir() {
-			return r.ShouldSkipDir(path)
+			return r.shouldSkipDir(path, ignoreFilesMatcher)
 		}
-		if match, err := r.ShouldSkipFile(info); err != nil {
+		if match, err := r.shouldSkipFile(path, ignoreFilesMatcher); err != nil {
 			return err
 		} else if !match {
 			// skip this file
@@ -250,11 +257,16 @@ func (r *LocalPackageReader) readFile(path string, _ os.FileInfo) ([]*yaml.RNode
 	return rr.Read()
 }
 
-// ShouldSkipFile returns true if the file should be skipped
-func (r *LocalPackageReader) ShouldSkipFile(info os.FileInfo) (bool, error) {
+// shouldSkipFile returns true if the file should be skipped
+func (r *LocalPackageReader) shouldSkipFile(path string, matcher *ignoreFilesMatcher) (bool, error) {
+	// check if the file is covered by a .krmignore file.
+	if matcher.matchFile(path) {
+		return false, nil
+	}
+
 	// check if the files are in scope
 	for _, g := range r.MatchFilesGlob {
-		if match, err := filepath.Match(g, info.Name()); err != nil {
+		if match, err := filepath.Match(g, filepath.Base(path)); err != nil {
 			return false, errors.Wrap(err)
 		} else if match {
 			return true, nil
@@ -273,8 +285,12 @@ func (r *LocalPackageReader) initReaderAnnotations(path string, _ os.FileInfo) {
 	}
 }
 
-// ShouldSkipDir returns a filepath.SkipDir if the directory should be skipped
-func (r *LocalPackageReader) ShouldSkipDir(path string) error {
+// shouldSkipDir returns a filepath.SkipDir if the directory should be skipped
+func (r *LocalPackageReader) shouldSkipDir(path string, matcher *ignoreFilesMatcher) error {
+	if matcher.matchDir(path) {
+		return filepath.SkipDir
+	}
+
 	if r.PackageFileName == "" {
 		return nil
 	}
@@ -288,5 +304,5 @@ func (r *LocalPackageReader) ShouldSkipDir(path string) error {
 	if !r.IncludeSubpackages {
 		return filepath.SkipDir
 	}
-	return nil
+	return matcher.readIgnoreFile(path)
 }

kyaml/kio/pkgio_reader_test.go

@@ -4,59 +4,14 @@
 package kio_test
 
 import (
-	"io/ioutil"
-	"os"
 	"path/filepath"
 	"strings"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
 	. "sigs.k8s.io/kustomize/kyaml/kio"
-	// "sigs.k8s.io/kustomize/kyaml/testutil"
 )
 
-// setup creates directories and files for testing
-type setup struct {
-	// root is the tmp directory
-	root string
-}
-
-// setupDirectories creates directories for reading test configuration from
-func setupDirectories(t *testing.T, dirs ...string) setup {
-	d, err := ioutil.TempDir("", "kyaml-test")
-	if !assert.NoError(t, err) {
-		assert.FailNow(t, err.Error())
-	}
-	err = os.Chdir(d)
-	if !assert.NoError(t, err) {
-		assert.FailNow(t, err.Error())
-	}
-	for _, s := range dirs {
-		err = os.MkdirAll(s, 0700)
-		if !assert.NoError(t, err) {
-			assert.FailNow(t, err.Error())
-		}
-	}
-	return setup{root: d}
-}
-
-// writeFile writes a file under the test directory
-func (s setup) writeFile(t *testing.T, path string, value []byte) {
-	err := os.MkdirAll(filepath.Dir(filepath.Join(s.root, path)), 0700)
-	if !assert.NoError(t, err) {
-		assert.FailNow(t, err.Error())
-	}
-	err = ioutil.WriteFile(filepath.Join(s.root, path), value, 0600)
-	if !assert.NoError(t, err) {
-		assert.FailNow(t, err.Error())
-	}
-}
-
-// clean deletes the test config
-func (s setup) clean() {
-	os.RemoveAll(s.root)
-}
-
 var readFileA = []byte(`---
 a: b #first
 ---
@@ -94,18 +49,18 @@ func TestLocalPackageReader_Read_empty(t *testing.T) {
 }
 
 func TestLocalPackageReader_Read_pkg(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("b_test.yaml"), readFileB)
-	s.writeFile(t, filepath.Join("c_test.yaml"), readFileC)
-	s.writeFile(t, filepath.Join("d_test.yaml"), readFileD)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("b_test.yaml"), readFileB)
+	s.WriteFile(t, filepath.Join("c_test.yaml"), readFileC)
+	s.WriteFile(t, filepath.Join("d_test.yaml"), readFileD)
 
 	paths := []struct {
 		path string
 	}{
 		{path: "./"},
-		{path: s.root},
+		{path: s.Root},
 	}
 	for _, p := range paths {
 		rfr := LocalPackageReader{PackagePath: p.path}
@@ -167,13 +122,13 @@ metadata:
 }
 
 func TestLocalPackageReader_Read_JSON(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
 
-	s.writeFile(t, filepath.Join("a_test.json"), []byte(`{
+	s.WriteFile(t, filepath.Join("a_test.json"), []byte(`{
   "a": "b"
 }`))
-	s.writeFile(t, filepath.Join("b_test.json"), []byte(`{
+	s.WriteFile(t, filepath.Join("b_test.json"), []byte(`{
   "e": "f",
   "g": {
     "h": ["i", "j"]
@@ -184,7 +139,7 @@ func TestLocalPackageReader_Read_JSON(t *testing.T) {
 		path string
 	}{
 		{path: "./"},
-		{path: s.root},
+		{path: s.Root},
 	}
 	for _, p := range paths {
 		rfr := LocalPackageReader{PackagePath: p.path, MatchFilesGlob: []string{"*.json"}}
@@ -217,16 +172,16 @@ func TestLocalPackageReader_Read_JSON(t *testing.T) {
 }
 
 func TestLocalPackageReader_Read_file(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("b_test.yaml"), readFileB)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("b_test.yaml"), readFileB)
 
 	paths := []struct {
 		path string
 	}{
 		{path: "./"},
-		{path: s.root},
+		{path: s.Root},
 	}
 	for _, p := range paths {
 		rfr := LocalPackageReader{PackagePath: filepath.Join(p.path, "a_test.yaml")}
@@ -265,16 +220,16 @@ metadata:
 }
 
 func TestLocalPackageReader_Read_pkgOmitAnnotations(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("b_test.yaml"), readFileB)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("b_test.yaml"), readFileB)
 
 	paths := []struct {
 		path string
 	}{
 		{path: "./"},
-		{path: s.root},
+		{path: s.Root},
 	}
 	for _, p := range paths {
 		// empty path
@@ -313,16 +268,16 @@ g:
 }
 
 func TestLocalPackageReader_Read_nestedDirs(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("a", "b", "b_test.yaml"), readFileB)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("a", "b", "b_test.yaml"), readFileB)
 
 	paths := []struct {
 		path string
 	}{
 		{path: "./"},
-		{path: s.root},
+		{path: s.Root},
 	}
 	for _, p := range paths {
 		// empty path
@@ -374,13 +329,13 @@ metadata:
 }
 
 func TestLocalPackageReader_Read_matchRegex(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("a", "b", "b_test.yaml"), readFileB)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("a", "b", "b_test.yaml"), readFileB)
 
 	// empty path
-	rfr := LocalPackageReader{PackagePath: s.root, MatchFilesGlob: []string{`a*.yaml`}}
+	rfr := LocalPackageReader{PackagePath: s.Root, MatchFilesGlob: []string{`a*.yaml`}}
 	nodes, err := rfr.Read()
 	if !assert.NoError(t, err) {
 		assert.FailNow(t, err.Error())
@@ -414,14 +369,14 @@ metadata:
 }
 
 func TestLocalPackageReader_Read_skipSubpackage(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("a", "c", "c_test.yaml"), readFileB)
-	s.writeFile(t, filepath.Join("a", "c", "pkgFile"), pkgFile)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("a", "c", "c_test.yaml"), readFileB)
+	s.WriteFile(t, filepath.Join("a", "c", "pkgFile"), pkgFile)
 
 	// empty path
-	rfr := LocalPackageReader{PackagePath: s.root, PackageFileName: "pkgFile"}
+	rfr := LocalPackageReader{PackagePath: s.Root, PackageFileName: "pkgFile"}
 	nodes, err := rfr.Read()
 	if !assert.NoError(t, err) {
 		assert.FailNow(t, err.Error())
@@ -455,14 +410,14 @@ metadata:
 }
 
 func TestLocalPackageReader_Read_includeSubpackage(t *testing.T) {
-	s := setupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
-	defer s.clean()
-	s.writeFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
-	s.writeFile(t, filepath.Join("a", "c", "c_test.yaml"), readFileB)
-	s.writeFile(t, filepath.Join("a", "c", "pkgFile"), pkgFile)
+	s := SetupDirectories(t, filepath.Join("a", "b"), filepath.Join("a", "c"))
+	defer s.Clean()
+	s.WriteFile(t, filepath.Join("a", "b", "a_test.yaml"), readFileA)
+	s.WriteFile(t, filepath.Join("a", "c", "c_test.yaml"), readFileB)
+	s.WriteFile(t, filepath.Join("a", "c", "pkgFile"), pkgFile)
 
 	// empty path
-	rfr := LocalPackageReader{PackagePath: s.root, IncludeSubpackages: true, PackageFileName: "pkgFile"}
+	rfr := LocalPackageReader{PackagePath: s.Root, IncludeSubpackages: true, PackageFileName: "pkgFile"}
 	nodes, err := rfr.Read()
 	if !assert.NoError(t, err) {
 		assert.FailNow(t, err.Error())

kyaml/kio/testing.go

@@ -0,0 +1,55 @@
+// Copyright 2019 The Kubernetes Authors.
+// SPDX-License-Identifier: Apache-2.0
+
+package kio
+
+import (
+	"io/ioutil"
+	"os"
+	"path/filepath"
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+)
+
+// Setup creates directories and files for testing
+type Setup struct {
+	// root is the tmp directory
+	Root string
+}
+
+// setupDirectories creates directories for reading test configuration from
+func SetupDirectories(t *testing.T, dirs ...string) Setup {
+	d, err := ioutil.TempDir("", "kyaml-test")
+	if !assert.NoError(t, err) {
+		assert.FailNow(t, err.Error())
+	}
+	err = os.Chdir(d)
+	if !assert.NoError(t, err) {
+		assert.FailNow(t, err.Error())
+	}
+	for _, s := range dirs {
+		err = os.MkdirAll(s, 0700)
+		if !assert.NoError(t, err) {
+			assert.FailNow(t, err.Error())
+		}
+	}
+	return Setup{Root: d}
+}
+
+// writeFile writes a file under the test directory
+func (s Setup) WriteFile(t *testing.T, path string, value []byte) {
+	err := os.MkdirAll(filepath.Dir(filepath.Join(s.Root, path)), 0700)
+	if !assert.NoError(t, err) {
+		assert.FailNow(t, err.Error())
+	}
+	err = ioutil.WriteFile(filepath.Join(s.Root, path), value, 0600)
+	if !assert.NoError(t, err) {
+		assert.FailNow(t, err.Error())
+	}
+}
+
+// clean deletes the test config
+func (s Setup) Clean() {
+	os.RemoveAll(s.Root)
+}

kyaml/kio/tree.go

@@ -6,6 +6,7 @@ package kio
 import (
 	"fmt"
 	"io"
+	"os"
 	"path/filepath"
 	"sort"
 	"strings"
@@ -33,10 +34,11 @@ var GraphStructures = []string{string(TreeStructureGraph), string(TreeStructureP
 // TODO(pwittrock): test this package better.  it is lower-risk since it is only
 // used for printing rather than updating or editing.
 type TreeWriter struct {
-	Writer    io.Writer
-	Root      string
-	Fields    []TreeWriterField
-	Structure TreeStructure
+	Writer          io.Writer
+	Root            string
+	Fields          []TreeWriterField
+	Structure       TreeStructure
+	OpenAPIFileName string
 }
 
 // TreeWriterField configures a Resource field to be included in the tree
@@ -72,7 +74,7 @@ func (p TreeWriter) packageStructure(nodes []*yaml.RNode) error {
 		// create a new branch for the package
 		createOk := pkg != "." // special edge case logic for tree on current working dir
 		if createOk {
-			branch = branch.AddBranch(pkg)
+			branch = branch.AddBranch(branchName(p.Root, pkg, p.OpenAPIFileName))
 		}
 
 		// cache the branch for this package
@@ -91,6 +93,19 @@ func (p TreeWriter) packageStructure(nodes []*yaml.RNode) error {
 	return err
 }
 
+// branchName takes the root directory and relative path to the directory
+// and returns the branch name
+func branchName(root, dirRelPath, openAPIFileName string) string {
+	name := filepath.Base(dirRelPath)
+	_, err := os.Stat(filepath.Join(root, dirRelPath, openAPIFileName))
+	if !os.IsNotExist(err) {
+		// add Pkg: prefix indicating that it is a separate package as it has
+		// openAPIFile
+		return fmt.Sprintf("Pkg: %s", name)
+	}
+	return name
+}
+
 // Write writes the ascii tree to p.Writer
 func (p TreeWriter) Write(nodes []*yaml.RNode) error {
 	switch p.Structure {

kyaml/kio/tree_test.go

@@ -6,7 +6,6 @@ package kio_test
 import (
 	"bytes"
 	"fmt"
-	"path/filepath"
 	"testing"
 
 	"github.com/stretchr/testify/assert"
@@ -76,9 +75,9 @@ spec:
 └── foo-package
     ├── [f1.yaml]  Deployment default/foo
     ├── [f1.yaml]  Service default/foo
-    └── foo-package%s3
+    └── 3
         └── [f3.yaml]  Deployment default/foo
-`, string(filepath.Separator)), out.String()) {
+`), out.String()) {
 		t.FailNow()
 	}
 }